AMCG00020799


Basic Information

Item Value
gene id AMCG00020799
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34015287 ~ 34019959 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020799
CCGCCCTGGAGCTCAGAGACGCGCACTCGTACTGGAGCCTCTGTTTGTGCGGTTCTTTTTATATGTTTAacgtttatattaaaaaaataataatgtaattgtctCATGAGGGATATTGCTGTTGAAGTTCCGTGGCGCGTCTCTTCTCCGCACCTTCCTCTCTCGTCCCGGAGGGCATTAGGGGCAGCAGCTGGACCTGCTTTGCGCCACTAGAGTCTCCACTTCAAGACCCGCTCAGCGTCCGGTCCGGTCCggtcctctcctctccccgGCGCCATGAACTGCACAAAggTGCTGCATGTGTTCGGTGGCCACTCCGTGCCCCAGCCCGTGATGCAGGTGGACCTGGCCATGCGCCTATGCCTGAGCCAGAGCCCCCCGCTGTGCCACTTGCTCGGGGTGACCTCCCTGAAGCCCCTGCGCCCCTGCCTGAACCCCAAGGCCGCCCAGCAGCAGCCACCCCCGGCCAGCCCGACCCCAATGGAGAGGCCGGTGCCCCAGAGCAGCAGCGGCATCAGCGGGGATGGCACGAGCACCAAGAAGAAGCGTGTTGTGTTTGCCGACTCAAAGGGCCTGTCTCTGACGGCGGTGCGCTTCTTCTCCGAGCGGGAGGAGGCGGCGGCGGCAGCGATGGCCTCCCTGCTCTCCGAGCCGCCCCTGCTGCAGCTCGGCAGGCTGGGGGGCCTGCGTGTGGGTGAGGATTCGGGGAAAACCTCGACGAACGACAGGCGGCAGCGTCTGCAACTGGGCTTCCCCCAGCCCAACACTGACTACCTGGACTTCCGGGCCCAGCTGCAGCAGAACCTGGTGCAACTGGAGAGCTGTGCGGTGCACGAGCGGGCACTGAGCGGCACGGTGAAGGTGCGCAACGTGAGCTTCGAGAAGACGGTCAGCGTGCGCATCACCTTCGACTCCTGGCGCTCCTTCCATGACGTGCCCTGCACCTACCTACAGCAGCGCTATGGCGGCTCCGACACAGACACCTTTGCCTTTGAGATCCCGCTGCCCGACATCCTGGACCCCCGAGAGCGCGTAGAGTTCTGCGTCTCCTACACCCCCGCCGGCTCCCATACCACCCTGTGGGACAACAACCGTGGACGCAACTTCCGCATCTTTGTCTGCAGAGCCCCCCTGCCGGTCGGGGGCTCCAAACAGCAGCAGAAGCCCCCACACCTTCAAAAGAGGTCCTTGACCCCCCCACTGCAGCGCAGACGCCTGTGGGGGTCCTTGGAGTCCAAGCACCTGCCCGAGCTGGAGCCCCTGAGCCCCCGGGCAGCCACCACCGAGCTGCTCTTCTCACACCTGAGCTGGGGGCGGCTGGAGAGCTCTTCCCCCTACTGGTGAACCAGAATGGATCAGATTTGTCCGCCGCCTGGTTTTCACATCCACTTTTGCGGTTAACCAGATGAGCTTGGGATTTAAAGACTTCTTAACTTGGGTAAAGGACTAGTGTCTTCTGACCACAAACCCAAGAAGCGGAGCCCAAGCGGGTCTGGGGCACTTCTGACTTGAAGGGCAGGGATGCACGGCCAAACTTGCCTTTTCTCGGTTACCGCGATCTCAGGATTTCCTCTCGCTCTGACAGTACAGATCGGCACAATACCTGCAACTATCggactattttatttattgaaaagctGAGCATGCCGTGGCTCAGGAAAATAgaagcattatttaaaataaaaaagcaacctTATTTGAGTGCAGTTTCAACACTGGCCACTTTTAGATTCCCTGTGCCTGCTCTCCCTTGGTCATGTACTTTTTTCCTCAACTGTCAATccattatttagcatttattcatttattttttcccttctaaACTTTATTACTCGATGTGTGAAATGCAGAGATCTCACGCGTTTGTCTAGCTGCTGTGGAGCCTCGGTCACCTGGCTACCTCGACCTCAGCCTGCCTCAAGCAGTGACCTCCCGTAGGTACGGTGACCGCTGCCAGTAGTCCACACGGCTCCAGGGTTTCTGGTTAATGTTCATCTGAACTGTGTGTTCTCAGCTCTGTAGGGTTCTGCTAATCCCACCTGGCCTGTTGCAGTTCTTGTGtgcattgcttttaaaactgcagtCATAATGCTTTCTCTTGCACAGGGCTTAAGTTGTAGTTCAAAAGCATGCCACCCAGTGTGTTATCCATACTAGACTGTATCTACATGACCATTAAGTTGTTCCCAAAGGGTGAATGATTGGGAATGTCTCCCATGATCCCCCTTCAAAGGGACGCAGCTTCTTGGATTAAGAAACTCACCGCTTAAGTTTTTAAACCACTTCCTCCTTGCTCTGCCTGGTCTTTTGCTGCTTTTAATATTGTACAATACTTACAATAGAAGTATTGTAATTCTATTCCACCGTGCTGATTTATGCGTTTTAGTCATAGTGAATGGGGATGTGTATTCACCAGCCTTAGGTTTGGCTGCTTTCTTCCCCCTCATAGGGGTTTTAGTCAGTCTGGGAGTTCCTCCCTGGTTTATGTGCAGTGcagttgtgtgtgagagtggagGGCATATCTGGAGTTGTTTGATGGTGTTTTGCTGCCTtttgtaaattgaataaataaacattttttaaatttgttggGTTTTGTGTACATCTCCTGCCCCCCATCCCCTGACGAAAAGCACTTCCAGGTCGGTGACAAGTTCCATTAAAACCCTTGAGTACtgattttataatttgattaaatgcTACAGTTTTGTACTTAACTCATGTTTGGAAATTCAGCCTTTGTGAAAACCCACTTGAACTCAAGGACCACTTGAGCGTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020799 True 2781 mRNA 0.54 3 34015287 34019959

Neighbor

gene id symbol gene type direction distance location
AMCG00020802 NA coding upstream 8484 33999477 ~ 34006803 (+)
AMCG00020801 NA coding upstream 24474 33968192 ~ 33990813 (+)
AMCG00020797 dpysl2b,LOC107678023,LOC107560521,LOC108427246 coding upstream 120750 33881738 ~ 33894537 (+)
AMCG00020795 LOC107720674,LOC107687791,LOC108427248,LOC107561399,LOC103036208,LOC100689723,LOC102791612,LOC101471601 coding upstream 170769 33841870 ~ 33844518 (+)
AMCG00020794 ppp2r2a,ppp2r2ab,LOC106585558 coding upstream 179834 33819061 ~ 33835453 (+)
AMCG00020800 NA coding downstream 13231 34033190 ~ 34040263 (+)
AMCG00020806 NA coding downstream 131521 34151480 ~ 34155511 (+)
AMCG00020809 NA coding downstream 178539 34198498 ~ 34202915 (+)
AMCG00020808 mthfd2,LOC106580352,LOC107728122 coding downstream 213866 34233825 ~ 34238280 (+)
AMCG00020814 NA coding downstream 322732 34342691 ~ 34357137 (+)
G65670 NA non-coding upstream 1133169 32879099 ~ 32882118 (+)
G65594 NA non-coding upstream 1328967 32629723 ~ 32686320 (+)
G65579 NA non-coding upstream 1429573 32563430 ~ 32585714 (+)
G65534 NA non-coding upstream 1570643 32443881 ~ 32444644 (+)
G65503 NA non-coding upstream 1707568 32307438 ~ 32307719 (+)
G65829 NA non-coding downstream 30035 34049994 ~ 34051037 (+)
G65831 NA non-coding downstream 42193 34062152 ~ 34062595 (+)
G65873 NA non-coding downstream 202387 34222346 ~ 34261929 (+)
G65877 NA non-coding downstream 219930 34239889 ~ 34267100 (+)
G65891 NA non-coding downstream 396636 34416595 ~ 34480123 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 54705 33954806 ~ 33960582 (+)
G65705 NA other upstream 906861 33107873 ~ 33108426 (+)
G65691 NA other upstream 1025842 32946731 ~ 32989445 (+)
AMCG00020783 dock5,LOC106585561 other upstream 1270552 32707933 ~ 32744735 (+)
G65590 NA other upstream 1420833 32592482 ~ 32594454 (+)
G65830 tet3,LOC106906237 other downstream 39152 34059111 ~ 34059465 (+)
AMCG00020820 NA other downstream 384575 34404534 ~ 34411620 (+)
G66008 NA other downstream 764253 34784212 ~ 34787474 (+)
G66060 NA other downstream 947885 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 1127644 35147603 ~ 35149418 (+)

Expression


Co-expression Network