AMCG00020800


Basic Information

Item Value
gene id AMCG00020800
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34033190 ~ 34040263 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020800
GGCGGCTTCCACACAGAGTTTGATGTTTGTGGTCCCAGGCCGTGAAATTATCGCTTTATTAACGCGCTAGAAACGAAAGTGCCCTCGACTGCACCGTACTTTTTTCggggaacattttttttttaccgctCCGTTGTTTGGGAAACAGTTGCAGCGGAGTGTAACTGTTGGCTAAATCAGAGGTGCTGAGGGGTGATGTCAGGCCCTGGCAGAGGGGACCCCCTTCCCCCGGGGGGGTCTCGGCCGGCGATGCCCCAGGGGCTGGTGGGCAGGAGATTGCCTGCAGCGATGACCTCAGCGCGCCTGCCGTCCATGCGCTCTCGGGACCTGACGCTGGGGGGGGTGAAGAAGaaAACCTTCACTCCCAACATCATCAGTCGCAAGGTCAAGGATGAGCAGAAAGAGGAGAGTGGCTATAAGAAGGAGAGGaaggacagagacagggacCGGCAGCGAGATGGGCGGGGCAGAGGCCGGGGTCGCCCAGAGGTCATCCAGTCCCACTCCATCTTTGAGCAGGGGCCGGCCgagatgatgatgaagaagagaGGTGGCTGGGAGAGCGAAAGGGACACCCCCAACACGGGCCCCTCCCCAATCATCAACATCAAGAAGGAGAAAAGAGAGACCGAGGAGGAGACCAAGGAGATACTGCGCATGCTGGAGAGAGACAACttcctggatgacccCCGGCTGCACAGTGACCTGCGCCGCTGTCCCGTCCAGCTGCCCATGTCGGTGTCGGGCTGGGTGTTCCGGGAGGAGGACGCCTCGCTGGGGAGCCTGAAGACCGAGGggaagcaggaggaggaggaggaggaggggatgGAGCTGGACATGAACCCTGCGGCCACCGTCAAAGTGAAGGAGGAGCCGGTGGAGGTCACTGAGGTCAAGAAGGCGGAGCTGGCCTTCAAGCCACCGCCCCTCCCAAAGGCGGAGTCTCTGGCAGAGCTGCTGAGTGGCCAGACCCTCTGCAAGGGGGAGGAGCTTCTGTTCCTGCAGCTCCCCGACACACTGCCGGGGCAACCCCCCACCCAGGAGCAGCGGCCAATCAAAACCGAGGTCCAGACGGAAGACGGCCAATCGGTGCTCATTAAGACTGAGCAGAGCCAGGAGTCCCTGCAGAGCGAGGACTGCTGCAGCCTGACTGATCTGGGCGAGGGGCAGGTGGGCCGCCTACTGGTCCGGAAGTCTGGCCGAGTACAGCTCATCCTGGGCCACATCAAGCTGGACGTCAGTATGGGGACGCCCTGCTCCTTCCTGCAGGAGCTGGTGTCAGTGGGCTCTGGCGATGGGCGCACGGGGGACCTGACAGTGCTGGGACACATCAAACACAAGCTGGTCTGCTCCCCAGACTTCCAGGCCCTGCTGGAGAACCGGGTTTGAGGGTGGGATCCCTCTGTTCCTTGTCCCAGGGGGAGGGGTGGAATGTGGCTCCACCCACTTCCTGCATAAGGGGCAGGGCTTTAGGAACGCCAGACTCCAGATGTCACTGATTGGCTGAAGGGACTCTGTGCACAGGGCAGTGAGAGGACTTCACAGGGACGGTTGTGCTTTGAGAACAGCAGGGTGAGACTACAGTCAACTACTGGGAACAGGGGGGCAGAGAATGATTTTAGTTTGAaaaatttgttaaaaatgaGCTTAATGTCACACCATGTAATCCATTGCTCCCAACAGGCCTCCACAATCCAGCCTGGGAGGTATAGTTTTATTTCGTTTGCTAGTTTACTTTTCCCCAACACATCCAAATATAACGTTCTGTGAAAAGGGCAGGATGTGACATCAGAAGGAAGCTCTGCAGTGAGACGGAGCGGGAGGCGTGTTGTCTCGAGCCCAGCCTGTTTGCATTCATTTCACACTTGTACGTCTACCTCGCGCACAGGGCTCGCACTGCTTTTGTCTGCCATAGCTTGACTGAATGACTCGCAGggtgggagggggagagaatCAGAAGTGACCCAGATGGTTCTGTTTGCATGGGATGAAAAGGGTTCCAGGTTCTGTATTCTGCTCTACAACTCTCAGGTTATGGGTTTGCACATTAGAGAACCACCACCAGACTGTAAAAGCAATGCAGTGTTATtgtaataaactaatttaaaaacaca

Function

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03026 RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020800 True 2114 mRNA 0.57 9 34033190 34040263

Neighbor

gene id symbol gene type direction distance location
AMCG00020799 NA coding upstream 13231 34015287 ~ 34019959 (+)
AMCG00020802 NA coding upstream 26387 33999477 ~ 34006803 (+)
AMCG00020801 NA coding upstream 42377 33968192 ~ 33990813 (+)
AMCG00020797 dpysl2b,LOC107678023,LOC107560521,LOC108427246 coding upstream 138653 33881738 ~ 33894537 (+)
AMCG00020795 LOC107720674,LOC107687791,LOC108427248,LOC107561399,LOC103036208,LOC100689723,LOC102791612,LOC101471601 coding upstream 188672 33841870 ~ 33844518 (+)
AMCG00020806 NA coding downstream 111217 34151480 ~ 34155511 (+)
AMCG00020809 NA coding downstream 158235 34198498 ~ 34202915 (+)
AMCG00020808 mthfd2,LOC106580352,LOC107728122 coding downstream 193562 34233825 ~ 34238280 (+)
AMCG00020814 NA coding downstream 302428 34342691 ~ 34357137 (+)
AMCG00020817 NA coding downstream 353438 34393701 ~ 34402124 (+)
G65670 NA non-coding upstream 1151072 32879099 ~ 32882118 (+)
G65594 NA non-coding upstream 1346870 32629723 ~ 32686320 (+)
G65579 NA non-coding upstream 1447476 32563430 ~ 32585714 (+)
G65534 NA non-coding upstream 1588546 32443881 ~ 32444644 (+)
G65503 NA non-coding upstream 1725471 32307438 ~ 32307719 (+)
G65829 NA non-coding downstream 9731 34049994 ~ 34051037 (+)
G65831 NA non-coding downstream 21889 34062152 ~ 34062595 (+)
G65873 NA non-coding downstream 182083 34222346 ~ 34261929 (+)
G65877 NA non-coding downstream 199626 34239889 ~ 34267100 (+)
G65891 NA non-coding downstream 376332 34416595 ~ 34480123 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 72608 33954806 ~ 33960582 (+)
G65705 NA other upstream 924764 33107873 ~ 33108426 (+)
G65691 NA other upstream 1043745 32946731 ~ 32989445 (+)
AMCG00020783 dock5,LOC106585561 other upstream 1288455 32707933 ~ 32744735 (+)
G65590 NA other upstream 1438736 32592482 ~ 32594454 (+)
G65830 tet3,LOC106906237 other downstream 18848 34059111 ~ 34059465 (+)
AMCG00020820 NA other downstream 364271 34404534 ~ 34411620 (+)
G66008 NA other downstream 743949 34784212 ~ 34787474 (+)
G66060 NA other downstream 927581 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 1107340 35147603 ~ 35149418 (+)

Expression


Co-expression Network