AMCG00020816


Basic Information

Item Value
gene id AMCG00020816
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34413614 ~ 34418667 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020816
CTGAAGCCAGGACTGCTTGGGCGTTTCAGCCAGACGAGACCGTGATAAGTAAAtagagggagggacagacagagagagagagagaaacaatcAAGTCATTTAATACAGCTCAGATGCACAGCGACAGAAGCAGAGGAACGAAAGTGGAAgtgaaaagcatattttaaagaGGAGAGCAGAAGTTGGGCTTTAGTGTAATTGCGGCGGTGCTGTTCGGTGCTGTTCGGTGCTGTTCGGGAGGGCTTGGATGCAAAGCGAGCCTCGACTCGGTGACGTTCGTGTTCGGGCCGGAATACGTCCTGCTGTGCGATGGACAAGGGGAAGAGCAAGCTGGAGGAGACCCGGGTCGTGGTGGAGGACGTGAAGGGCATCATGCAGAACAACATCCAAAAGGCGGAGGAGCGAGAGGGGAAACTGGAGGAGCTAGAGGAGAGGTCCGAGGCCCTGCTGGAGCAGAGCAAGACCTTCGTCAAGACCACGACTAAGGTGGTCCGCAAGAAACGCTGGGAGCACATGAAGATGAAGCTGCTGGTGGTTGCGGTGGTCCTGGTGGTGATTGCCGTCCTGATTGGGGTGGTGGTGGCCTTCTCCAGCTCAGGATCCTCCAGTGGTACGGTCAAGTATACGTCCAATGACAAACCTGTTGAGGAAGGGCCCAGATTACCAGACGAGGAACCGTAAACCCTCCATAAAAGTGCCGggacagagatggagaaagtGGACAGTAAGCATGGATTCACAGTCCCgggatgggggggaggggggttacaGGACTTCACAAGCTGGATCAGCAGAGGGTGGCGGTGGAGGGGGGAGAAGGGAGGCACAGTGCAGGATTCCTGGTCTTCATCTCTGGGAGTGTAATGGTACTACTTTGGATACACTCGTCTTGTTTGGTGCCGGACCACACCGGACTTTTCCCCAAGATTCAACCAACCGCTCGGAGCCGCTGCCGGGTGCCTGCTGGGGTTGGAGGTCAGAGGCGGGGGACAGATGAAGTGGGAGGTCTAGAACAGGATCTCCTCTTCTTCCCCCACAGGAGGCAAAGAAAGATCCTTGAAAGATCCCGACGCTCAGCTGTGGGCCCCACACACTCGTCCGGTTCTGAATGCAGCCCCAGAATAGTTCTGTCAGTCTGTTCTCAGGACACCTCAAAAATTGAAGCTCTACCACATAACTATAAAGTTATTACAACTTAATAATGttccagatcttttatttctCAGTTGTGACTCTGAATTACAGTTCCGTACGTCTCCGCACTGCAGCACCACAACTCGAACCGGTGTCCGGCCTTAAACCACAGCATTCAGTGTGGCCTTGAACCCTAAACCCTAACCCAAGCCCAGACAAAACCGCAACCAGAGCTCCATCCCCACATTTAAATCTACAGTGTAAACGGGTTGCTGTGGCCACACGGACAGTGGCAGCGGATCCGCCCTGAGCCCAGCGCTACTGCCGTCGACCTCCAGTCCTCTCTCTGACCTTAGGAGTGTTGTGCATGTCAGAGGACCGTGCGCACCCAGAGCGCTCCACTGCCACCGACCGACTCGAAGCCATCGAGAGGAGACTGAAGCCTGGGGGAGTAGCCACACACTGCACTATGTAAATGGGGGTTTTAACACAATACTCATTCATATACATATGGCCTGTAACGTGTTGTAGGGAGGAGTTGATTCATTTGTAAAACATCCTGCTTTTTACAACAAGTGCCTTAACAAGTGTCtttgtacaaaaatacacacacacacatgcataccgTATGTTTATGATTGCTGTTTTAAAGAGATTGTATGtcttaagaaagaaaatactggTATAGTATTGTAATGAGAACACTTAAAACAAGGAATTACCAGTTTATTTTGTAACCATCTGTTCCATTTTTCAAATCCACATGCAATTTAGAAGCTAATCCTCACAGATAGTTGAGCTGCTTTGTGTGGAGCTGCTCACCATCtcgtgtaaatgtaaatatttgaagcATTTAAAGTAACATGCATTAATAGACTATtgtatatatgattatataGTGTAGTAAaattgtttattatgaataatgcAGCTTTACATGTTGACAAAtccattaatattataattttgaaataaacaattaaaaaaacagagctAATTGCTTTATATTTCACCCAGGTTTTGCAGATATGAGAGAAGAATGATGCTTCATCAGTTAGGAATACCTAACCTGTCACTGTGCAGTCTAAAGCAACAGGCTGGATTTCGTTTTGAATCATTGTGTAATAATGCACGGTAATTTGTGCAAACCTTGCAGCTCACCTTGTGTAAAGACTCAAGGTTAATCGATGATGATTATCAGAATTACAACAGTGGAGACCtcatttatgttaatgttaaaaggtttaagatttgtactttgtaacCTTATAACAATGTATTAACTTTTCAGGCATTCCTTCAGCTGTGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020816 True 2445 mRNA 0.47 3 34413614 34418667

Neighbor

gene id symbol gene type direction distance location
AMCG00020817 NA coding upstream 11490 34393701 ~ 34402124 (+)
AMCG00020814 NA coding upstream 56477 34342691 ~ 34357137 (+)
AMCG00020808 mthfd2,LOC106580352,LOC107728122 coding upstream 175334 34233825 ~ 34238280 (+)
AMCG00020809 NA coding upstream 210699 34198498 ~ 34202915 (+)
AMCG00020806 NA coding upstream 258103 34151480 ~ 34155511 (+)
AMCG00020818 NA coding downstream 2167 34420834 ~ 34426849 (+)
AMCG00020823 NA coding downstream 26612 34445279 ~ 34450197 (+)
AMCG00020825 NA coding downstream 31861 34450528 ~ 34451727 (+)
AMCG00020824 NA coding downstream 33544 34452211 ~ 34456901 (+)
AMCG00020819 LOC107597267,LOC107654641,LOC107741205,LOC105890027,LOC107663217 coding downstream 43799 34462466 ~ 34475645 (+)
G65877 NA non-coding upstream 146514 34239889 ~ 34267100 (+)
G65873 NA non-coding upstream 151685 34222346 ~ 34261929 (+)
G65831 NA non-coding upstream 351019 34062152 ~ 34062595 (+)
G65829 NA non-coding upstream 362577 34049994 ~ 34051037 (+)
G65670 NA non-coding upstream 1531496 32879099 ~ 32882118 (+)
G65954 NA non-coding downstream 93990 34512657 ~ 34512879 (+)
G65956 NA non-coding downstream 95379 34514046 ~ 34515896 (+)
G65962 NA non-coding downstream 108200 34526867 ~ 34527075 (+)
G65978 NA non-coding downstream 258244 34676911 ~ 34732379 (+)
G65994 NA non-coding downstream 328226 34746893 ~ 34748114 (+)
AMCG00020820 NA other upstream 1994 34404534 ~ 34411620 (+)
G65830 tet3,LOC106906237 other upstream 354149 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 453032 33954806 ~ 33960582 (+)
G65705 NA other upstream 1305188 33107873 ~ 33108426 (+)
G65691 NA other upstream 1424169 32946731 ~ 32989445 (+)
G66008 NA other downstream 365545 34784212 ~ 34787474 (+)
G66060 NA other downstream 549177 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 728936 35147603 ~ 35149418 (+)
G66149 NA other downstream 745146 35163813 ~ 35164985 (+)
AMCG00020874 NA other downstream 1328489 35747156 ~ 35750446 (+)

Expression


Co-expression Network