AMCG00020817


Basic Information

Item Value
gene id AMCG00020817
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34393701 ~ 34402124 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020817
TGCGTGATGACGACACCAACGTGAGAGCGTCGCAACGTGCGCATGCGTAGAGCAATCGGCGCAAATTTTCAAAAACTCAGGCCGGGGCCAGGAAGCcgacataaaaacaaaacccaatccACACTGCACTAGTAAGGCAGTTTTATCAATTAAAGTgctgttgtttaattaaaacaataatcgTTTCAGCTTGGCTGTGCATGAGGTTTACCCCAGCAGAGGACAGCGGTTCAGATCCAGCCATGAGTGCCTCGTCCACCCCACTGTCTCGGAGGCAGTCCCACGTGCTGTCGGAGGGGGCGGTGGATGGCCATTTCCTCTCCCCCTCCACGCAGCGCAAACCGGTCCAGCTGAGCAGTGGACCCCTCCTCTCCAGCTGCCCAAGCAACGATGACGAGCAGGAGCGGCGCCAGAGGAGGCGCTCCAAGGTCATCAATCTGCACATGGGCAGCCTGGACAGCTCCCTGCAAGATTCGCCCGCCCGTAGTGCTACAGGGACTCCAGCCCCATTGCCCAAGCTGTCCAATGCCCAGATCTGCGAGCATTACTCCACCTGCATCAAGCTGTCCACCGAGAACAAAATCACCATGAAGAACGCTTTCGGTCTGCATCTGATCGACTACATGGCAGATATCCTCAAACAGAAGGACTCCGAGCTCACTAACTTCAAGGTGGCAGCAGGCACCCTGGATGCCAGCACCAAGATCTACGCAGTCCGGATAGACGCCGTTCACACCGATGCCTACAGGGTTCTGGGAGGGCTGGGGTCTGATGCCAAGCCGGAGGAAGGTAGGGAGGCTGAAGCCGGAGAGGTGGACGGCGAGGACCCGGAAGCTGACAAGAAAgcagtgaagaagaagaagaagcccTCCAACAAGAAGACCGTGGAGCAGAACCTCAGCAACATCAACAGCTCGGAGTCGGAGCGGAAGTGTGAGGTGGACCCCATGTTCCAGAAGCTGGCGTCCTCGTTCGACGAGACCAGCACGGCGGGGGTGTTCCTGCCCGTGCTCTTCAGCGAGGACTGCTACAGCGAGTTGCGCTTCCCCTCTGACGTCATCCTGCTGCGctcccaaccccccccacagcTGCCACCCCCGACCCTCGTCCCCGCTGCCCCCTTCACAGCCGCCCTACAGCTGGTCCAGGAGAAAAAGTCCATCTGCCCGTCTCTGGAGAACTTCTCTTTCACCAAGTGGAGCAGTGAGGACCATGACCAGAACGTGAGCAACATTCTGGAGAAGTTCAAGAGCAGCGAACATGTGTTCGACGTCAACGCCGAGCCAGAGGACGAGGGTGAGCCGCTGGGCTGCGGGGACGACTTCGACGCGGACGCCTGCGATGACGGGCcggaggagggggagggcggCAACGGGCAGCAGGAGCGCAGAGACGTCTGTGCCAGCAACAAAACTCCTGGACGGGACGTGATCGCCATCGGGGACTGGGACGTCGGGACCATGTGCCTGCAGCTGTCCTCCAAGCCGGGAGAGTACTCCTACTTCAGCCCCAGGACCATGTCTCTGTGGGCCGGCCCAGGCCACTGGCGTTTCAAACCCCGACACAAGCTGGACCACATGCCCGACAAGGATGCCAAGAAGAGGAAGCCCAAGAAGACATTCGAGCTCAACTTTGATGACGACATCAACTTCGAGGTCTACTTCCGGACTACCAGGGCGGCTACAACCAACAGCAAGTCTGCTCTGGACACAACGAACAAGAAGACAGTTCTGCCCAATGACTTTCACTACGAGCCGGAGCTGCTGAGTCAGCTGAGCAGCAAACCTTCAAATACACTGTCCAGGCTGTCACAGAAGCCCGTTTCGGGGGAGAGTGCGGAAGGGGTGGGGGATTACGATTACAACAACCCCAATGACACGTCCAACTTCTGCCCTGGCGTTGAGGCAGAGGACAGCGATGAGGAGCTGGGTGGCTTCTCCGGGCCGGAAGGAGCGTTTGAGACTGGCTTCCCAGCCGAGTCCAACGGACTGGACATCACCACCTACGGAGAGGGCAACCTGATTGAGATCAACTATGCTAAGACGGCCAAGAAGATGGACATGAAGCGACTGAAGACGAGCATGTGGGGGCTGCTGACGGACTGCCAGGACACGCAGGCCGAGGTGAAAGAAAGCGACGATGCATCAGAAGTGAATGGGGAGAAAGCTTTCAGCCAGACCACCAAGAGTCTTCTCCAGAGgctgccCTCCACCATGGCCCAGAACCTCTCGGTGCCCCTGGCCTTCGTTGCTCTGCTCCATTTAGCCAATGAAAAGAACCTGGAGCTCTGCAAGCTGGAGGACATGTCTGACATCATCATCAGACAAGGCCGCTGACGGGAGCGGCGCAGGGGAGTTCGCCTTTagattacttttttatatagatcactatttttttatgtttcttaaatattttttaagcttttaaaatgacCATGAAGAAATCAACCATAACGATCTCCTGCCAGTAAACAGATGTATTGAAAAGAGACAGCGCTGCTCTCGTTGCTTCCTAACACTCCTCTTCACAGtgtgaataaatatgaatttacaGATGTTAAACTTTCAATCTGGTTGTCTGCAACTGAAGATAAGTCCTTCAAACAGTGGCACCAGTGGTTTCAATTTATACCCAAATTCGTCTCACACGAGCGTGTTGGAGCTTCTTGCGGGGGCCTGTCAACTGGAAGCCAGCGCATCCGAACGGCCCGTTTCCTTGACCTTTCTCTTCAGGAGGCAGGGGCAGAACACATGTGGTTTTGTAAGAATGCCAGCTGTTCTTAACCGTAAAAATCTGGCAGCTTGTCTAACacctaaataaaataagaaaacatcttTTGGTAGGAGAAacattcaggttttttttttaaatctttttttaatctctgaatGCGTCCCGTATTACGCTGTACGTGTCCAAAACTGCCTCTGTGTACATACGTCCTCGTGGGAAGCCctgtggtgtctgtgtgtgtgttggtcacTGCCCATCTCTTTCATGTTGCCTTTAAAGACTCAGCCATCTGTTCTCCTGTATCCTGTTCTTCTGTGTGGAAATCAATACCATCTCTCACTCTGCTGCGTCTGTCTGAGAAGAGTctcgttttcaaattaatcttgcgtatttaaacaaaaacaccttgCTGTACAGCTTCTGTGTGTACGTTTTTTCCCtgaacattttttgtatttagatgtttagttcagtttttctgatgcttattttatgtaaaacatgtaaatagtaaaacaaataaaaaaagtgtcctTTTCCCTTTCA

Function

GO: NA

KEGG:

id description
K06676 BRRN1, BRN1, CAPH; condensin complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020817 True 3279 mRNA 0.53 18 34393701 34402124

Neighbor

gene id symbol gene type direction distance location
AMCG00020814 NA coding upstream 36564 34342691 ~ 34357137 (+)
AMCG00020808 mthfd2,LOC106580352,LOC107728122 coding upstream 155421 34233825 ~ 34238280 (+)
AMCG00020809 NA coding upstream 190786 34198498 ~ 34202915 (+)
AMCG00020806 NA coding upstream 238190 34151480 ~ 34155511 (+)
AMCG00020800 NA coding upstream 353438 34033190 ~ 34040263 (+)
AMCG00020816 NA coding downstream 11490 34413614 ~ 34418667 (+)
AMCG00020818 NA coding downstream 18710 34420834 ~ 34426849 (+)
AMCG00020823 NA coding downstream 43155 34445279 ~ 34450197 (+)
AMCG00020825 NA coding downstream 48404 34450528 ~ 34451727 (+)
AMCG00020824 NA coding downstream 50087 34452211 ~ 34456901 (+)
G65877 NA non-coding upstream 126601 34239889 ~ 34267100 (+)
G65873 NA non-coding upstream 131772 34222346 ~ 34261929 (+)
G65831 NA non-coding upstream 331106 34062152 ~ 34062595 (+)
G65829 NA non-coding upstream 342664 34049994 ~ 34051037 (+)
G65670 NA non-coding upstream 1511583 32879099 ~ 32882118 (+)
G65891 NA non-coding downstream 14471 34416595 ~ 34480123 (+)
G65954 NA non-coding downstream 110533 34512657 ~ 34512879 (+)
G65956 NA non-coding downstream 111922 34514046 ~ 34515896 (+)
G65962 NA non-coding downstream 124743 34526867 ~ 34527075 (+)
G65978 NA non-coding downstream 274787 34676911 ~ 34732379 (+)
G65830 tet3,LOC106906237 other upstream 334236 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 433119 33954806 ~ 33960582 (+)
G65705 NA other upstream 1285275 33107873 ~ 33108426 (+)
G65691 NA other upstream 1404256 32946731 ~ 32989445 (+)
AMCG00020783 dock5,LOC106585561 other upstream 1648966 32707933 ~ 32744735 (+)
AMCG00020820 NA other downstream 2410 34404534 ~ 34411620 (+)
G66008 NA other downstream 382088 34784212 ~ 34787474 (+)
G66060 NA other downstream 565720 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 745479 35147603 ~ 35149418 (+)
G66149 NA other downstream 761689 35163813 ~ 35164985 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G483494 NA non-coding CI01000339 null 4580259 ~ 4584201 (-)
rainbow trout (Oncorhynchus mykiss) LOC110523576 LOC106563296 misc NC_048569.1 CM023223.2 29174319 ~ 29187968 (+)
striped catfish (Pangasianodon hypophthalmus) G370853 NA non-coding NC_047620.1 CM018566.1 5342755 ~ 5343080 (-)
mexican tetra (Astyanax mexicanus) G319046 ncaph non-coding NW_019172884.1 APWO02000081.1 381326 ~ 398131 (+)