AMCG00020836 (snrnp27,snut3,LOC106585104)


Basic Information

Item Value
gene id AMCG00020836
gene name snrnp27,snut3,LOC106585104
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34808604 ~ 34814294 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020836
ACTAACACCCCCCTCCTCCACAACACAGCGGTAATGGCCGCCCTGCGCTAGGGGTCGCTGTCGCGATGGCAAGGGGGGCGCCGTGCGCGGAACTCAGAGTGGAGACCGTGTTTGCAGGGGAACATAATAAGCGCTGCAGCAGCCCGACATTCTGGCAGTTTCTCGACCGcggagtttgttttgtttctgtgtttgtgtttttctccgGATCCCCGGCGTGTTTCAGCTGCTGCCGCCCCGCAGGCTGTGTGTCCAGTAATGGTGCGAAGCAGGAGTCGCTCTCCACCGAGACGAGagAGACGTCGTTCTCGTTCTGCCTCCCGAGAGCGCGAGAGGCggcggagagagagggagcgctCTCGCTCTCGTGACCGGGACAGGAGGAGGTCTCGCTCCAGGTCCCCACACAGGAGGCGCTCCAGGTCCCCCAGGCGCCACAGGTCGTCCTCCCTGTCTCCACTGAGGGCGAAGGACCGGCGGGATGACGACAAGACGGACAGCAAGCCGGCGAAGGAGCACGAGATCTCGGaGGAGGACCTGCAGGGGAAGACTGAGGACGAGATTGAGATGATGAAGCTCATGGGGTTCAGCACCTTCGACACAACCAAGGGAAGGAAGATGGATGGCTCGGTGAATGCGTTTGCTGTCAACGTCTCCCAGAAGAGGAAATACAggtctgtgtttgtctgctacCCGAGACACAGATTTAAACAACCACCCCCCCCCGTTCAGTCCATGCTTGACAAGTTGCAGGCTTGTGAATAAGGCACCTCCAAGTCCTGGATGCTTCAAGGTTGTTTAAAGTGAATCTATGTAAGGACAGGCGCACGCTGGGTTAAAAATAACCCAGAATATAATCACCATCTGCCTGATTGCTGCCAATCTGTACAAGAACCTGTGCTTCTAAGGCCTGAACAGCACCAAACGGCTGTACCCTGGATGGCTGCCCTGTGTGCTAGGTCTGCAGGCCTCGTGCGTCTCCTGTGCAGCTCAATGGAGTTTAACCGAAGTTTGAGAGAAGGACGACCCCAATTCCGTGTCTGGTGAATATAGCGGGCGGTCGTCGCTCTGTGCCCGAGCTCTGCTCACTGGTCACCTCTGCAGTGTGCCATGCTGTACCAGCAGCGACTGCATGTGAGTCACGGGCGCTGTCCCTGACAGGACAACAAGATCGATCGCTCCCACCCCGGCCCTGCTTACGCAGCCTGTTCGCTTTTGTAATGCAGCTGTACTGTAGCATAAGCTTTCCTTGTGCCGACTCTGGCCTTTGATATCCGCTACGTGCCTCCCTGACCTGCATATATGAGTGTGCGCAGTCAGTCCTTTTTTCTGTTCCTTCCCCTGCCAATTCTGTACTTCCTATTCCCCCCGTGCCCGAGTATACCTCCTGCGCCGCGTGAGAGCTGAGGTTGGCACAGAGACCGTGTGAGGTGGAAGGGGAGACTCCGGAGAGAGAGGCAGCCAATCGCAGGGCTTTGGAATGTCCTCTAATCAGCAGGTGTTCCATTGCAGGGAGAGCAGTCATCCCATTGGTGGAAAATGATGTAATGTGTTAGAGGGGGGAAAATAATGatgtaatctttcttttttttcctagGCAATACATGAACAGAAAAGGTGGATTTAACAGACCCCTGGATTTCATTGCTTGAAGAAAAAGAACCGGACTGTGTGCAACAAGGTCaccaatgtttttctttcctgcagATGTTTGTAAGATTTCCAGTGCtagagttgtttatttttatttttttttattcccccctccTGCATATTTATGGAAATTGCAGTCTTGGGAGCCGGTCCAGGCTGACTCTAGGTGATCTaaaatgcagattattttttcccagtCCACAACAATACAGCGTTAATGCCTTGCCCTACAGATCCACCTTTACCCTGTGCCAGCAGACCCCCCTGTGTAGCGCACTGCGGACTGCAAGGTTGACATGCACAGTCCCCCAGAGCGGCCGTGTAGATCACTTTCCACACGGCCAGTGTCCCTGTAAAGTAGTGTGGCTGTTTGTATTGCCCTatgaatttgcttttttttccctggtTCGTTTTCTCAGTGAATGGTAGTGCCAGTGTGGGCAGTGTGCTGCAGGGGGCGTTTGCTTGGTGGTGTTGGTTTTCAGGGCAGTTTGTTGCAGCTGCTCCTCAGGGTAGTTCAGGTGAAAGGTTTAATTagttgtattttgcatttctgcTCCTAAAGGAAGGTGTGTGAGGCATTGGAGGGCAGCTGGGGCAGTGAGTCACAGTCCAGGGCAGGTGCAGAACAGCAGTGCCTCCTCAGTCCTGCCTGGCTCACCTCCACTCACCTTCCAGCTCAAACAGCCAGAGTCCGTCTCTTCTGCATGTGTGTCAAAGTTATCTGCAATTGTTTTTGCAGAACACAGGTTTGTTTCCTGTTCAAACAGCCAGCCACCCCCTTTCACCTCCCAGATGATCTGTTTTGCATAACTTTAGTTTCCTCTGCAGGACAGCTCCCAATGTATTACAACAGCAGAATTTACTCtgacttgtgtttgtgttctggctctgattatttttacttcatgtaATCCGCATAAAGAAGCCTGATCATTTCCATTTATGTAACTGCGGTATTTCGTAAGtcttgatatttaaataataaaaacccttGTATGAGTCTAGTCTGCTTaagatattttctttattttcaaccACATGCCTTGCACAATTTGAAGCACAAATGGCAGCGTCCTGTGGTGTCACACCCTGGCTGAATAGAATGCGCTTTCTTCATTACTGGTCAAAACCAGTCTAATAAACAGTCTCCTTAAAGCAATTAA
>TU82568
AATAAGCGCTGCAGCAGCCCGACATTCTGGCAGTTTCTCGACCGcggagtttgttttgtttctgtgtttgtgtttttctccgGATCCCCGGCGTGTTTCAGCTGCTGCCGCCCCGCAGGCTGTGTGTCCAGTAATGGTGCGAAGCAGGAGTCGCTCTCCACCGAGACGAGagAGACGTCGTTCTCGTTCTGCCTCCCGAGAGCGCGAGAGGCggcggagagagagggagcgctCTCGCTCTCGTGACCGGGACAGGAGGAGGTCTCGCTCCAGGTCCCCACACAGGAGGCGCTCCAGGTCCCCCAGGCGCCACAGGTCGTCCTCCCTGTCTCCACTGAGGGCGAAGGACCGGCGGGATGACGACAAGACGGACAGCAAGCCGGCGAAGGAGCACGAGATCTCGGaGGAGGACCTGCAGGGGAAGACTGAGGACGAGATTGAGATGATGAAGCTCATGGGGTTCAGCACCTTCGACACAACCAAGGGAAGGAAGATGGATGGCTCGGTGAATGCGTTTGCTGTCAACGTCTCCCAGAAGAGGAAATACAgGCAATACATGAACAGAAAAGGTGGATTTAACAGACCCCTGGATTTCATTGCTTGAAGAAAAAGAACCGGACTGTGTGCAACAAGGTCaccaatgtttttctttcctgcagATGTTTGTAAGATTTCCAGTGCtagagttgtttatttttatttttttttattcccccctccTGCATATTTATGGAAATTGCAGTCTTGGGAGCCGGTCCAGGCTGACTCTAGGTGATCTaaaatgcagattattttttcccagtCCACAACAATACAGCGTTAATGCCTTGCCCTACAGATCCACCTTTACCCTGTGCCAGCAGACCCCCCTGTGTAGCGCACTGCGGACTGCAAGGTTGACATGCACAGTCCCCCAGAGCGGCCGTGTAGATCACTTTCCACACGGCCAGTGTCCCTGTAAAGTAGTGTGGCTGTTTGTATTGCCCTatgaatttgcttttttttccctggtTCGTTTTCTCAGTGAATGGTAGTGCCAGTGTGGGCAGTGTGCTGCAGGGGGCGTTTGCTTGGTGGTGTTGGTTTTCAGGGCAGTTTGTTGCAGCTGCTCCTCAGGGTAGTTCAGGTGAAAGGTTTAATTagttgtattttgcatttctgcTCCTAAAGGAAGGTGTGTGAGGCATTGGAGGGCAGCTGGGGCAGTGAGTCACAGTCCAGGGCAGGTGCAGAACAGCAGTGCCTCCTCAGTCCTGCCTGGCTCACCTCCACTCACCTTCCAGCTCAAACAGCCAGAGTCCGTCTCTTCTGCATGTGTGTCAAAGTTATCTGCAATTGTTTTTGCAGAACACAGGTTTGTTTCCTGTTCAAACAGCCAGCCACCCCCTTTCACCTCCCAGATGATCTGTTTTGCATAACTTTAGTTTCCTCTGCAGGACAGCTCCCAATGTATTACAACAGCAGAATTTACTCtgacttgtgtttgtgttctggctctgattatttttacttcatgtaATCCGCATAAAGAAGCCTGATCATTTCCATTTATGTAACTGCGGTATTTCGTAAGtcttgatatttaaataataaaaaccctt

Function

symbol description
snrnp27 Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12846 SNRNP27; U4/U6.U5 tri-snRNP-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020836 True 2819 mRNA 0.51 5 34808604 34814294
TU82568 False 1601 TUCP 0.51 6 34808774 34814169

Neighbor

gene id symbol gene type direction distance location
AMCG00020839 mxd1 coding downstream 17548 34787271 ~ 34791056 (-)
AMCG00020831 LOC102225713 coding downstream 37962 34763193 ~ 34770642 (-)
AMCG00020833 NA coding downstream 53290 34751379 ~ 34755314 (-)
AMCG00020834 LOC105015180,LOC106568058 coding downstream 66933 34729127 ~ 34741671 (-)
AMCG00020832 NA coding downstream 80240 34719704 ~ 34728364 (-)
AMCG00020838 NA coding upstream 3919 34818213 ~ 34826629 (-)
AMCG00020845 mrps24,LOC102797859,LOC106562909 coding upstream 75953 34890247 ~ 34891705 (-)
AMCG00020849 NA coding upstream 195597 35009891 ~ 35023812 (-)
AMCG00020854 NA coding upstream 271523 35085817 ~ 35099957 (-)
AMCG00020851 NA coding upstream 286713 35101007 ~ 35111425 (-)
G66004 NA non-coding downstream 58454 34749444 ~ 34750150 (-)
G66003 NA non-coding downstream 59275 34749127 ~ 34749329 (-)
G66001 NA non-coding downstream 61243 34746941 ~ 34747361 (-)
G65957 NA non-coding downstream 292706 34514368 ~ 34515898 (-)
G65915 NA non-coding downstream 388414 34416657 ~ 34420190 (-)
G66087 NA non-coding upstream 84490 34898784 ~ 34942966 (-)
G66123 NA non-coding upstream 189284 35003578 ~ 35077562 (-)
G66126 ppia,LOC108241540,LOC100699155 non-coding upstream 265384 35079678 ~ 35095653 (-)
G66154 NA non-coding upstream 320684 35134978 ~ 35135563 (-)
G66181 NA non-coding upstream 438108 35252402 ~ 35252669 (-)
AMCG00020810 LOC103363194,LOC101160416,LOC107087288,LOC101481896,LOC107739988,LOC102234237,LOC107675956 other downstream 568907 34222315 ~ 34239697 (-)
G65756 NA other downstream 1439499 33368625 ~ 33369105 (-)
G65679 NA other downstream 1917111 32886364 ~ 32891493 (-)
G65641 NA other downstream 2151585 32655134 ~ 32657019 (-)
AMCG00020774 snrpg other downstream 2197896 32607862 ~ 32610708 (-)
AMCG00020837 NA other upstream 24467 34838761 ~ 34841323 (-)
G66054 NA other upstream 48325 34862619 ~ 34865305 (-)
AMCG00020853 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 other upstream 335274 35149568 ~ 35170179 (-)
AMCG00020867 zgc:110197,arl3,LOC108263849,LOC106563294,LOC103033567 other upstream 530412 35344706 ~ 35349499 (-)
G66279 NA other upstream 836686 35650980 ~ 35692460 (-)

Expression


Co-expression Network