AMCG00020842


Basic Information

Item Value
gene id AMCG00020842
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34881491 ~ 34892993 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020842
cggagagagagaaggggagaaagagagCGGCCAGCACGGTGGTCAGTGACACAGCGGGACCCAGGGCAGAGGGCAGCGATGCTCCCAGCAGGAGGAGCCCGGGGTTGTGCGGGGAGCGGAGCGGCAGTGAGGCGGCACTGAGGCGGCAGTGAGGCCGGGTCTGGTCCGGGGGCTGTGTCAATGCAGACCCGCGCTCCCTGTTGGAATCAGCAAATTGGTGCGCACCTCACCAGGGAGATGGACGTGCCCATGGCCAATCAGAGCTACAGGAGCTGTCAGCCCTGGCAGCATCCACAGGGCTACAGCGCCCGACCTCCTCCCATCCACCTGAATAACTCGCCTATTGTAGTCCACAGTGCTGCAGTTGCACCAACCTACTGTCCAATCAGAGGGGTGCCAACAGTCCCTGCACCTCTGAGTTTGGACCCCTCCCAGCACCTGTCTGCCCCACCTCCCCCGTCCTCTGGATCAGGGTTCGAGTGGCAGCAGCACTGGGGGGCCCCACCTCTCGCCCCACCCCCTCCATGCCCCAGCCTGTCAACATTACCCCCTATAGCCAACGGTGTAGTTGAGCCTTGGGAGTCGAGCCCTGACCAGTCTGGCCATAATGACACACGGCTGCCACTGGGGGGCGGCAGCACTAAGCAGgactgCAGTGTTCAGAGCCCTGGCTCTCGTTACGGCCTGGACCCCCAGCTCATCCCCAGTGCGGTGACGGTCATTGAGGAGGACAGGGCCCAGTGGGAGGGGCGGGTGTTTGTGTCAGACTCCAGTGGACAGCTGCCCCCCCTGTCCAGTACTGAGTGCACGGTGGAGGATGTAGGCAGTGCCAGTCCCCGGTTTATCCGCTGCACCTCGTACTCTTTTCCCAGTGAAGGGGGGGCGGCCCAGCGCTGCCACCTGCCCCTGGGGGCCATCATCACCCCGCTCGCCCAGCCTGGGGCAGGAGAGCGCCCCCTGGTGCAGGTGTCCCGCAGTGAGGAGGGCgcctgtgtgctgtgctgcgGGGGGTGCGCCGCTCAAATGTGCCCCTCTTTCACCTGGCAGGACTGTGGACAGAGGTTCCACTGCCCTTTCTGCGGGCACGTCACTGAGGTGCCCTGGCAGTGCTACCAGCCCACGGCGCGGGGGAGAACGCGGCGCcgGGAGTGTCCTGCTCTCCTATTGGCAGTGGATGTGTCCAGTCAGGCCGTGAGAGGAGGTCAGCTGACCCACATCTGTCAACAGCTCCGCTCTTTCCTCGACTCCCTGCAGAGGGACAGCGGCTCGGACCAGTCGCAACTGAGAGTGGGAGTAGTCACCTACCACAGCAGTCTTCACCTCTACAACCTTAACCCCGCCCTGTCTCGCCCCCACATGCTGGTTATCACGCAGACTGAGGAACTGGAGCTGCCGGTGTGGGAGGGTCTACTGGTCCCACTGAGAGACTGTAGGACAGCCATTGACAAGGTGCTGCAGCAGATCCCCAGTCTGTTCTCGGAGGCAGAGGACTCTCCGGCATCCCAGGAGCTGCCCGTGCACTACGGCCTCCACATCCTGAAGGTGGCTGGCTGTCCAGGGAAGGTGCTGTTTTTCCACACAGCGCCCCCCAGTGACGGGAGCCTGAACTGCAGCAGCGGCTCCTCTGGCTTCTTCAGCTCCAGCAAAGAGAAGTCACTGTTCCAGCCCCCGGAGCACTGCGTCGCGTTGGCTCAGGAGTGTGTCGCTCAGGGCTGCAGCTTCCATCTCTTCCTGTTCTCCCAACAGGCAGTGGGAGGGGCCTGGCCAGGACACACCCCTTATTTGACTGGGGGTGGGGTGTATAGCTATGGCTGCTTGCAGGGACAGGTGGACTCAGAGCAGTTCCACAGTGACCTAAGGAGGTGTgtggacacagagacaggctACAGGGTGGAGATGCAAGTCTCTGTAAGCAAAGGTCTGCGAGTGTCTGGGTGTTTTGGGGCGTTCACCCCCGGCCCTGACCCTGCCCACATCCGCCTAGCCACCATCGATTGGCACACGGCCCTCGCAGTGCAGTTCACACACCACAGCCCATTGGACGAGGAGAGGGGCGTGGTCATACAGGTGGCCCTGTCCTACACGTCGTCTCTGGGGGAGAGGAGGACCCGTGTGCACAGCCTGAGCTTGCGCTGCTCTCGCCACCTGGTGGACACCTTCCGCAACTGCCAGGCCGAAACACTGCTCACCTTCTACTGCAAGAGAGTGTACTGTGCAGTGCTGACCCGGCCCCTGCAGGACCTGAGGGACGAGCTGCTGACAGAGCTGACGGCCATGCTGACCTGCTACCGACAGCACTGCTCCACCACGGCCTTGACACATGGAcagCTGGTCCTGCCCCAGGGCCTGAAGTCTCTGCCGGTAATGCTGAACAGTCTGCGCAGGAGCGAGGTCCTGCTGCCCGGCCTGCGTGGCTCCGTCCCTCTCCGCCTGCAGCTGCGCAGCCAGCTCGTCACCATGGATACCGCCAGCACTGCTGCCCACTTCTATCCCCAACTCCTCCCCCTGCACCAGTGTGAGGAGGCAGTGTGTGCGGTGCGCTGCTCCAGGCTCagtctggaggaggagggggtgtaTCTGGCCCATGATGCCCTGGGCCTGGTGCTGTGGGTGGGCCACCATGCCCCCCCATCGTTCCTCTCCTGCCTGTTCAACACCCCCTCCTTTCCCGTGCTGCCCAGCGGAGAGTGCTGTCTGCCGGTGCTGGACAATGCCGTGTCTCAGCGAGTGAGGGGCCTCATCGACACCCTGCGCCGCCGCTCCGCGCACTCCCTCAGGTTGCAGGTGGTGAAGCAGGGGCAGGGCAGTGAGGAGGCTCTGCAGCGCCTCCTGGTGGAAGACAAGAGCCCTAACGGAGGGGCATCCTACCCCGACTTCCTGTACCACGTCCACGTCAGCTCTCTAAAGCTGCTCCCTTGAGCACAACGGTCTGTGTCCATCTGTCCCCAGTCTTGGTCTATGTCCCTGTCTCACTCTAGACTGTCTCTGTCCATCCACAaccttgtctctctcttcccacagtctgtctgtctgtccagtgCATGCctggccctctctctctcagtaatGCATCTTGTTCAAACTCTCAggcacttctctctctctttccaagGCAATAAATACCATAACTTCAGACAGACCTGAgcctctgtgtcagtgtgtatgtgtgtgagagagagtgtttgtgagagagagagtctgcaggggtgtgcgtgtgtgtgggtataTCTTTGCAAGTTCACATCTTTATACACGGTGTGCTCAGCTGGACAACAGAGgtgcacttgtgtgtgtgtacacacacacacacagataacacaaaaccaaaatgacGATCTACATTCTGCAAATTTGGAACGGTTTTATTACCccttctctgcctctccccaCACCAGCAAAGAGCCCAGGTAGTGCTCTGTACATCGCGTCACACCAGCCTCCTGCAGGGCAACATGCTCTGTCACGCTAGCCTGGCTGTGTGGCCCCCATCCCTATGCTGAAGTGGGAGCTCTATGTCTGCAGGTGTGCTGAGCCAGTCAGTGCTGTACAGGTAtagtctttttttccctctctcttgccATGCATCAGTGACCCTGTGCCCCTCACCCCATGAAAGAGGTGCAGGCTGCAGGAAAGCACTTTAGTTCACAACAcagtggctctccaggactagCGTTAGCCCGCGCTGAACTATCGCCCCCAGCCGAATACCCCcttcccaccccaccccacggGCCGCCGCAGCTCAGAGGTACTTGTACACGACTGGCTGCTCCAGCGTCTGCACCTCCATCTTGACGGGACACTTGTAGAAGTGCGAGAGCAGCGCCTCGGTGTAGCCCACCAGGAAGTAGAACTTCTGGGGCGGCAGCTTCTGCAGCATGAGGGCGCAGATGAGCAGCAGGTTGCCGCGGCGCTTGATGATGAGCTCGTTGGCCAGGCAGCCGTGGAACGTGCCGAAGATGAAGCGCCGCACGAACACGTCCTCCACGACCCGGTCCGCCGCGCCCTCCTCCCCGCACAGGTTACTGGTGTGCTGGGAGAGCCAGCCCTTCCGGTGGCCGATGTCATGGGGGCGCAGGGCATGCTCGTATGTCACCGGCCTATCGCCCTTCCCCACTCGCACCCGCGCAGCACGGttctgcacaGCAAACCGCGCTGGTCTGGATTGCTCGTGTACCGGGACGGGACAACACTATACATCCGAGTCGGGTCACCgggccCCGAGCAAAGACAGCTTCACCGCCGGCTGGAGAGCGGCGTCTGTGCGCAGGGGCGTCCATCACACGGGCCGGGCCATGGCCTCCTCGGGGGAGATGACGGAGCTGTACGACAACGCTCTGCTCGGGATACTGCAGCACGTCGGAAACATACAGCAGTTTCTGCAGGTCTACTTCGGCTTCCTCTACCGCAAGACGGACTTCTACAGACTGCTGCAGAGCCCCGAGGACCGCATGGGCTTCCCCCCGGGGGTGGCCGAGAAGATGGTCCTGAAGGTAGGTAAACCCGCCGAGATATGATCCGGACTGGTTTTGCCCGCGCTGCGTGTCCGAGCGCTCCCGCTGTGTTTTGTCTACCGCTTTCGGCCGGGTGGAAACGAGAGCCACAGTAACTATTTATACCCCGTGATCCCTCCGCAATGCCAGGTACGCGGTTTATAAACGCACATCCGAGCCGGAGAAAGCAGAGCCCCGGCAGGAGATTATTTTACCAAATGCTTGTGATGCATCTATAATTAAACCAGAAATGCGCTTCGCTGGACACGCCGTCATTTAGTTTCATTTCACGTGCATGCACTTGAACAATGAATGCAAAGTTATTTTTTGCGACTCCTGAATTGTAGGACTAATATAATTACACGtcatagaaatataaaattgagGGCAGCAAGCAGTCATAATTGCCAGACCCAAAGTGCACGACCAAGAACTGaagtctattttaaatgcatctgttaTCTTGGTAAAACTTAATTAATGAAGATCGTTTGAGAGCAGCTGAGGAAGTTGTGACGCGTCACCCTTTGGC

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020842 True 5028 mRNA 0.60 24 34881491 34892993

Neighbor

gene id symbol gene type direction distance location
AMCG00020840 NA coding upstream 1686 34878690 ~ 34879805 (+)
AMCG00020835 hk2,LOC106585103 coding upstream 16129 34850662 ~ 34865362 (+)
AMCG00020826 NA coding upstream 379289 34498286 ~ 34502202 (+)
AMCG00020827 NA coding upstream 388101 34481379 ~ 34493390 (+)
AMCG00020819 LOC107597267,LOC107654641,LOC107741205,LOC105890027,LOC107663217 coding upstream 405846 34462466 ~ 34475645 (+)
AMCG00020844 NA coding downstream 26825 34919818 ~ 34927630 (+)
AMCG00020843 camk2b1,LOC105905148,LOC102297714 coding downstream 42022 34935015 ~ 34936792 (+)
AMCG00020841 camk2b,LOC105889509 coding downstream 71629 34964622 ~ 34966485 (+)
AMCG00020846 ogdha,LOC108411168,LOC107691557,LOC107756845 coding downstream 84931 34977924 ~ 35005498 (+)
AMCG00020847 zmiz2,LOC107588944,LOC107698211 coding downstream 163151 35056144 ~ 35076420 (+)
G65995 NA non-coding upstream 131340 34749498 ~ 34750151 (+)
G65996 NA non-coding upstream 132148 34749127 ~ 34749343 (+)
G65994 NA non-coding upstream 133377 34746893 ~ 34748114 (+)
G65978 NA non-coding upstream 149112 34676911 ~ 34732379 (+)
G65962 NA non-coding upstream 354416 34526867 ~ 34527075 (+)
G66072 NA non-coding downstream 132010 35025003 ~ 35026229 (+)
G66151 NA non-coding downstream 274075 35167068 ~ 35170275 (+)
G66231 NA non-coding downstream 540275 35433268 ~ 35433558 (+)
G66258 NA non-coding downstream 659910 35552903 ~ 35553230 (+)
G66290 NA non-coding downstream 823052 35716045 ~ 35716249 (+)
G66008 NA other upstream 94017 34784212 ~ 34787474 (+)
AMCG00020820 NA other upstream 469871 34404534 ~ 34411620 (+)
G65830 tet3,LOC106906237 other upstream 822026 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 920909 33954806 ~ 33960582 (+)
G65705 NA other upstream 1773065 33107873 ~ 33108426 (+)
G66060 NA other downstream 74851 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 254610 35147603 ~ 35149418 (+)
G66149 NA other downstream 270820 35163813 ~ 35164985 (+)
AMCG00020874 NA other downstream 854163 35747156 ~ 35750446 (+)
G66362 NA other downstream 974400 35867393 ~ 35908402 (+)

Expression


Co-expression Network