AMCG00020855


Basic Information

Item Value
gene id AMCG00020855
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35147603 ~ 35149418 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020855
ATGTGGGCGGTGCTGCTCGTCCTGATTGCCCTGCTGCTCCTATTGCTCCTGCAGAGCCAGGTGTGCACGTGTCTGCAGGAGCTGCGCGGCGCTGCCCCGCCCGCCAACGCCAGCCAGAGCCTGCCGAGCGCCATCATCATCGGCGTGCGCAAGGGTGGCACGCGGGCACTGCTGGAGATGCTCAACCTACACCCAGGCGTGGAGGTGGCCAAGGCCGAGGTGCACTTCTTCAACCTGGACGACCACTACCACCGCGGCCTGGATTGGTACCGCGCCCAGATGCCGATGGCGCTGCCGGGCCAGGTAACGGTGGAGAAGACCCCGGGCTACTTCACAGCCCCGCAGGCGCCGGCGCGGGCGAAGGGGATGAACCCAGCGCTGCGGCTGCTGCTGATCGTGCGTGACCCGGCGGAGCGCCTCGTCTCCGACTACACGCAGGTGCGGCACAACCGCCTCCAGCGCCACAAGCCCTACCCACCCCTGGAGCAGCTGCTGATGCACGAGGGGCAGCTCAACACCAACTACAAGGCCATCCAGCGCAGCCTGTACCACCTACACCTGCGCAACTGGCTGCGCTACTTCCCCTCGGCACAGATCCACGTGGTGGACGGAGACGCCCTGATCCGGGACCCCTTCCCCGAGATCCACCGAGTGGAGAGGTTCCTGCGGCTGCCCCCCAGGATCACCCCCTCCAACTTCTACTTCAACAGCACCAAGGGCTTCTACTGCCTGCTCTCCGATGGCCATGACAAGTGCCTGGACGAGTCCAAGGGCCGCCCCCACCCCGAGCTGAGCCCCATCGTCCTGCGCACcctctgcaaatatttcaaggaGCCCAACCAGCACTTCTTCCACATGGTCGGCCGGACTTTCACCTGGTGCTGA
>TU82704
AGACGCCCTGATCCGGGACCCCTTCCCCGAGATCCACCGAGTGGAGAGGTTCCTGCGGCTGCCCCCCAGGATCACCCCCTCCAACTTCTACTTCAACAGCACCAAGGGCTTCTACTGCCTGCTCTCCGATGGCCATGACAAGTGCCTGGACGAGTCCAAGGGCCGCCCCCACCCCGAGCTGAGCCCCATCGTCCTGCGCACcctctgcaaatatttcaaggaGCCCAACCAGCACTTCTTCCACATGGTCGGCCGGACTTTCACCTGGTGCTGAAGCCTGGGGGATAAGGCCCTGGGCCGGGCTGGACTGGGCATGGCTGGGTTGGGTTGTGTCACCAGAAAGGCaggcgtgcacacacacacaggcaggctCGGAGTGaaatacacaataacaaaacCCCATAGCTGAGTGGAGGCTGCAATGGGCGTATCAACACTCAGCACTGGTGGGTTCGGTGTCCCGCTTAAGCCGGGCCTGTAGAAAGCTGTAGCGAGCCGCTCAGCCCAGATTGCGAGACAGACAGAACCTGGAGGGGCTGCAAACCTCAACTCCAGTTTAATTTCACTCAATTCCTCCCCCTGAGACAGTCCAGCCAGCTCCCCCCTCCGTAAACCAGGGGGATTACCATCGAACTCGGATGTTCCCATTTCTGTGCAGGAGGCCATTCGCCTGCCTACCTGCCATGAGATGAGAGACAAGCTGCCTCCCAAGCCCGCTGTGAAGAGTCAGGGAGTCTGAGGGAAGATAGAAGAGCCAACCGTCCAGACGCAAAGatgaattgttttttaatgggaAATTGGAAGAAATCATACCAAGTCCTCCCACCTCCCGTCCTCCCCCCCGGGTACAGGAAACGCGACCTGAGGGCTGGACTGGATAGCCACCAAGCTGCCAGTAAGGGAGGCATCTGAGCAATGGGACACTACAGAAAAGCTCTTCCCTGTACGCTGTCTGCCATCTTGTGTTAGCGGTTCTTGAGCAGTGCAGTGCATCCCACAGAACATGGGAATCATTCACGCAttcattcatgtgtgtgtgtgtgtgtctatgttgtgcgtgcgtgtgtgcttGTGAGTGTAGTGATTACTAGTACTGTGTAAGCGACTGCTCTTGTCCAGTCTGTGAGAGACACAGTGTTGAAGCACTAAGAGCAGATCAGAGGAGCTCGAATTGCACAGAACCTGAAGAACTGTTTTCAATGCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020855 False 885 mRNA 0.66 1 35147603 35148487
TU82704 True 1205 lncRNA 0.55 1 35148214 35149418

Neighbor

gene id symbol gene type direction distance location
AMCG00020858 NA coding upstream 61 35146077 ~ 35147542 (+)
AMCG00020850 NA coding upstream 27442 35113159 ~ 35120161 (+)
AMCG00020848 NA coding upstream 65220 35077401 ~ 35082383 (+)
AMCG00020847 zmiz2,LOC107588944,LOC107698211 coding upstream 71183 35056144 ~ 35076420 (+)
AMCG00020846 ogdha,LOC108411168,LOC107691557,LOC107756845 coding upstream 142105 34977924 ~ 35005498 (+)
AMCG00020856 NA coding downstream 9256 35158674 ~ 35161096 (+)
AMCG00020857 purb,LOC104936618 coding downstream 21634 35171052 ~ 35172101 (+)
AMCG00020859 NA coding downstream 23608 35173026 ~ 35175613 (+)
AMCG00020864 NA coding downstream 128442 35277860 ~ 35287818 (+)
AMCG00020863 LOC102779543,LOC108260282,LOC102217523,LOC106917416,LOC103149690,LOC106950839,LOC103473804,LOC101061943 coding downstream 205288 35354706 ~ 35356516 (+)
G66072 NA non-coding upstream 121374 35025003 ~ 35026229 (+)
G65995 NA non-coding upstream 397452 34749498 ~ 34750151 (+)
G65996 NA non-coding upstream 398260 34749127 ~ 34749343 (+)
G65994 NA non-coding upstream 399489 34746893 ~ 34748114 (+)
G65978 NA non-coding upstream 415224 34676911 ~ 34732379 (+)
G66151 NA non-coding downstream 17650 35167068 ~ 35170275 (+)
G66231 NA non-coding downstream 283850 35433268 ~ 35433558 (+)
G66258 NA non-coding downstream 403485 35552903 ~ 35553230 (+)
G66290 NA non-coding downstream 566627 35716045 ~ 35716249 (+)
G66319 NA non-coding downstream 608690 35758108 ~ 35761032 (+)
G66060 NA other upstream 139281 34967844 ~ 35008322 (+)
G66008 NA other upstream 360129 34784212 ~ 34787474 (+)
AMCG00020820 NA other upstream 735983 34404534 ~ 34411620 (+)
G65830 tet3,LOC106906237 other upstream 1088138 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 1187021 33954806 ~ 33960582 (+)
G66149 NA other downstream 14395 35163813 ~ 35164985 (+)
AMCG00020874 NA other downstream 597738 35747156 ~ 35750446 (+)
G66362 NA other downstream 717975 35867393 ~ 35908402 (+)
G66506 NA other downstream 1105281 36254699 ~ 36256511 (+)
G66551 NA other downstream 1765397 36914815 ~ 36917436 (+)

Expression


Co-expression Network