AMCG00020874


Basic Information

Item Value
gene id AMCG00020874
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35747156 ~ 35750446 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020874
GCTTCTTCCTGTTGGCCAGCAGCCTACGTTTCTGGCCCTGCTTTTTCATTCTGATTAATGTAAACGTCTAGGGATGTAGGGGAGGAACGGGGCTGTTAGTGGAAACGGCACTTATTTGTGTAttggttgtttatttgattgtttacCACTTCACATCTGAAATGGAGGTCCTGCGGGAGGAGGATGCGTCAGTGGGCGCCGACTTCGATcagcagaataaatacaaacccGGAGGCCGTCTGGACATGAGCCACGGCTTCCTGCACCATATTCGCAGAAACCAGATTGCCAGGGACGACTATGATAAGGAGGTGAAGCAGGCGAAGGAGAGGCAGAAGCGGCGGCACACGAACACGCCGAGCCGCCCGCGCCGCCCCGACATCCAGGTGTACCACCCGCGCCGCAGGAGTGGTTCTGAGCAGTGTGCGGGGATGGAGAACGAGGAGTCGAATGAGAGCAGCTCTGGCACAGAACCAGAGGCCCAGGGCACGGAGCTGTTCTGCCTAGAGTACGAGGCCGACGGTGGGCGGGTCTCCTCTTTCATCGTCTACAAGGAGGAGGAGCCAGAGCAGGTAGTGGCGAGGGTGGCGGCAGGCAACGCCCTGGACCCAGCCATGCGGGCGGCGCTGCGGGCCAGATTGCGGGAGGAGATGGACAAGCGGCGAGACAAGCGCTGAGAGGGCGTGCTGCTGCCCAGATGATCCACCGCAGCcccagaggagagggagagggagagggagagggagggcaaGAGGGTGCCAACCTCCTTTTTGAACTCCAGAGCCATCAAGTCTTACAGCTCCCTTCTTTGAACCATCTGACCACAATAATTCAACTGACTCAAACAAAACCCCCGCAACTGATTTGCAGAACCGACACGAGGGAAATACTGATCAtacccaaaaaaataaatcatgatcCTCAGCTCACAAAGGCAGGGCTGGACTTTGCCACTAGGTGACGGGGATGCTGATGTTGGCTCTGTCTCCTCCACGGATTGACAGACAACCCACCCCCTCCCAGCGGACCCTAAGAGCATCAGTGCTGGTTGACCAGGCCTGCGGGATGCTGGGACAGGAAGACTATGCCAGCTGTAGGTCTTGGAAGACTGGACTTCTGTTGGCAAGACTAAAAAATTAGGCCAAATCTCCTGCCATGAGCTGGCAGAGATCCACAGCCTCCAGAGTCTAaaggctgcatcacagacctgTCATGACTACAAGCCAGTCCAGTGCACTCATTCCAAGCTCCATCACTGTTTGGTATTTTCCGATTTGTTTCATTTTACGGCAGTCAGTGAATGATCTGCCCCCCCACCATTGGTTCTTTTCCCCACCCCCATTTTAGTCTGTCTTGAGCCTCTCGATTTACACAGACGATTAGAAAAGTAACACACGAAAGAATTCGAATGGctatgaattaatatttttctgCAGGTGTGTTTTGGGAGAAATTTGCAGCTTCAGAGTGGCCAGGGAGGCTCCTGTTGTTTAAAGGTTCTGTACAGATACGATAATAACTTGATTTCGTTATAATGCTGTAAAGCCGAGTAATTACAGCTGCAGACCACCCTTGTTCCCATCAGCTCAATCTGAGCTTAGAGAGAAAGTGGAGATGTTGGTGGAGATGAACTGAGACTGAGACTGTGAGAATGTGCTTCTGAGCTAAAAATAGGAAggtgtattgtttgtttttttgttgttgttgtagtaataaaccaatgcaaacattttattttagttattttgttttagcgGTTCAGTTTCTTAATTGTGCCTTGGCTCCTTTGATTCAATGGCTTCAATTTGATTTGATGGCTCCCGA
>TU82915
AGGGATGTAGGGGAGGAACGGGGCTGTTAGTGGAAACGGCACTTATTTGTGTAttggttgtttatttgattgtttacCACTTCACATCTGAAATGGAGGTCCTGCGGGAGGAGGATGCGTCAGTGGGCGCCGACTTCGATcagcagaataaatacaaacccGGAGGCCGTCTGGACATGAGCCACGGCTTCCTGCACCATATTCGCAGAAACCAGATTGCCAGGGACGACTATGATAAGGAGGTGAAGCAGGCGAAGGAGAGGCAGAAGCGGCGGCACACGAACACGCCGAGCCGCCCGCGCCGCCCCGACATCCAGGTGTACCACCCGCGCCGCAGGAGTAAGGACTGGGCCTGAGACCGCAGGCAGCCACCCTCCAAACACACAGGCCGACGCTGGCACCCTCCCTCAGACTTAGCCCCGTCTTAGAAAGGGTTTCACTCCTTtcacatgcatttcaaaatgcatcATGAGTAGCAGGAACGCTACGGAGTCGCCTGGGGGATGTAATGAGCAATACGATTATATTTTGTACTACTGGACAAGGCATCCTGAATTTAGAGAGCAGAATGTGGGTAAAAGGTTTGGGGTTTAaaaggtatattttaaaatacaaacaaatacacaaacaacattaacaaataaatctGTAGGTTTTGAGGGGGTTAAATGGAAGCACTGTTAatcaggggtgtgtgtgtgtctgtgtgcgtctcctCCAGGTGGTTCTGAGCAGTGTGCGGGGATGGAGAACGAGGAGTCGAATGAGAGCAGCTCTGGCACAGAACCAGAGGCCCAGGGCACGGAGCTGTTCTGCCTAGAGTACGAGGCCGACGGTGGGCGGGTCTCCTCTTTCATCGTCTACAAGGAGGAGGAGCCAGAGCAGGTAGTGGCGAGGGTGGCGGCAGGCAACGCCCTGGACCCAGCCATGCGGGCGGCGCTGCGGGCCAGATTGCGGGAGGAGATGGACAAGCGGCGAGACAAGCGCTGAGAGGGCGTGCTGCTGCCCAGATGATCCACCGCAGCcccagaggagagggagagggagagggagagggagggcaaGAGGGTGCCAACCTCCTTTTTGAACTCCAGAGCCATCAAGTCTTACAGCTCCCTTCTTTGAACCATCTGACCACAATAATTCAACTGACTCAAACAAAACCCCCGCAACTGATTTGCAGAACCGACACGAGGGAAATACTGATCAtacccaaaaaaataaatcatgatcCTCAGCTCACAAAGGCAGGGCTGGACTTTGCCACTAGGTGACGGGGATGCTGATGTTGGCTCTGTCTCCTCCACGGATTGACAGACAACCCACCCCCTCCCAGCGGACCCTAAGAGCATCAGTGCTGGTTGACCAGGCCTGCGGGATGCTGGGACAGGAAGACTATGCCAGCTGTAGGTCTTGGAAGACTGGACTTCTGTTGGCAAGACTAAAAAATTAGGCCAAATCTCCTGCCATGAGCTGGCAGAGATCCACAGCCTCCAGAGTCTAaaggctgcatcacagacctgTCATGACTACAAGCCAGTCCAGTGCACTCATTCCAAGCTCCATCACTGTTTGGTATTTTCCGATTTGTTTCATTTTACGGCAGTCAGTGAATGATCTGCCCCCCCACCATTGGTTCTTTTCCCCACCCCCATTTTAGTCTGTCTTGAGCCTCTCGATTTACACAGACGATTAGAAAAGTAACACACGAAAGAATTCGAATGGctatgaattaatatttttctgCAGGTGTGTTTTGGGAGAAATTTGCAGCTTCAGAGTGGCCAGGGAGGCTCCTGTTGTTTAAAGGTTCTGTACAGATACGATAATAACTTGATTTCGTTATAATGCTGTAAAGCCGAGTAATTACAGCTGCAGACCACCCTTGTTCCCATCAGCTCAATCTGAGCTTAGAGAGAAAGTGGAGATGTTGGTGGAGATGAACTGAGACTGAGACTGTGAGAATGTGCTTCTGAGCTAAAAATAGGAAggtgtattgtttgtttttttgttgttgttgtagtaataaaccaatgcaaacattt

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020874 False 1824 mRNA 0.51 4 35747156 35750446
TU82915 True 2045 TUCP 0.51 3 35747225 35750354

Neighbor

gene id symbol gene type direction distance location
AMCG00020875 NA coding upstream 10167 35727752 ~ 35736989 (+)
AMCG00020872 NA coding upstream 330311 35416052 ~ 35416845 (+)
AMCG00020869 NA coding upstream 334361 35405143 ~ 35412795 (+)
AMCG00020868 NA coding upstream 345632 35376270 ~ 35401524 (+)
AMCG00020863 LOC102779543,LOC108260282,LOC102217523,LOC106917416,LOC103149690,LOC106950839,LOC103473804,LOC101061943 coding upstream 390640 35354706 ~ 35356516 (+)
AMCG00020883 LOC106579887,LOC106585549 coding downstream 69710 35820156 ~ 35827073 (+)
AMCG00020884 NA coding downstream 101193 35851639 ~ 35859695 (+)
AMCG00020891 NA coding downstream 158906 35909352 ~ 35926494 (+)
AMCG00020893 tmed4,LOC107093818,LOC106566412,LOC101466713,LOC102209141 coding downstream 180176 35930622 ~ 35937150 (+)
AMCG00020892 ddx56,LOC107751685 coding downstream 186996 35937442 ~ 35950175 (+)
G66290 NA non-coding upstream 30907 35716045 ~ 35716249 (+)
G66258 NA non-coding upstream 193926 35552903 ~ 35553230 (+)
G66231 NA non-coding upstream 313598 35433268 ~ 35433558 (+)
G66151 NA non-coding upstream 576881 35167068 ~ 35170275 (+)
G66072 NA non-coding upstream 720927 35025003 ~ 35026229 (+)
G66319 NA non-coding downstream 7662 35758108 ~ 35761032 (+)
G66325 NA non-coding downstream 17795 35768241 ~ 35768571 (+)
G66342 NA non-coding downstream 48264 35798710 ~ 35857028 (+)
G66348 tmem127,LOC106585551,LOC107713035,LOC107699648 non-coding downstream 63297 35813743 ~ 35817779 (+)
G66395 NA non-coding downstream 254173 36004619 ~ 36074421 (+)
G66149 NA other upstream 582171 35163813 ~ 35164985 (+)
AMCG00020855 NA other upstream 597738 35147603 ~ 35149418 (+)
G66060 NA other upstream 738834 34967844 ~ 35008322 (+)
G66008 NA other upstream 959682 34784212 ~ 34787474 (+)
AMCG00020820 NA other upstream 1335536 34404534 ~ 34411620 (+)
G66362 NA other downstream 116947 35867393 ~ 35908402 (+)
G66506 NA other downstream 504253 36254699 ~ 36256511 (+)
G66551 NA other downstream 1164369 36914815 ~ 36917436 (+)
AMCG00020942 NA other downstream 1816590 37567036 ~ 37575856 (+)
AMCG00020954 NA other downstream 2366616 38117062 ~ 38137073 (+)

Expression


Co-expression Network