G59578


Basic Information

Item Value
gene id G59578
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2715528 ~ 2716915 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74500
CCCGGGCCCTTTGAGTACTGCTCAGAGCGATGATGTTATGGTATAGCAGGCCTACCTGGATTGTGATACTCGAACACCTTGAAGAGGGAGGAGCTGACCATGCCGGTGCGGAACAGCTCTCGAACCCTGAACCCCACGCACAGGGGCTCCTCGGAGGGGATCTGGAAGGAAAGGGCTGTGGGTGTAGAcagagcaaacacacacacactctctccctctccctctccctccctctctctctgctaaatGCAGGAGTCACTGGTGCTTTCAGAGCACTTTGTAAAAACATAACTGTGACAGAAACGAGGCTCTGTGGAGTCAACAGCTGCTGCTACAGTCAGTGACAATAGTGTCAAAGGTTACATCTCATACAGAAGAGGTGGCAAAAAGATGTTGAGTCATTTGTGTGTATACAGGAACAGGGTTTATCCACCTTGTGCAGGACTGGGGGGCAGGCCGGGGGCTGGGAGTTCAGGGCAGTTTGGCTGTGACGCCAGCAAGGAGAAATACTTACAGAGTCCACTTGGATGGTGACCCGGTCATCCAGGATCTTGTACTCAGAGATGAGGTAATCCACCCCATTGGCCAGCGTCCAAGTCTTCCTGGATGGGCACCAGACCAGTGGGCAGGTAGATCTCCATCACAGCGTGACCAGACTCGTAGTATACCTCGTTCTCCCGAGGCTTGTACCTGCACAACAGACACAAGCACGCATCCACACTGCAGGGCTCTGTGCGATAGTTTCTACCAGATCACTGCCTCCGTTCTGGCGCAAACGTTTTGTGTCGACCGCGCATCGAAGCAACCCAACCGATGAGTTGGCCGGACACCCACGGAGCGTTCTCCTCCGAGGATGAGCAGCCAAAGTGTAATTCTTAGAACAAAGACCCCCATCGGAGACATaagtgtgcatgagtgtgttcAGAgggattgtgtttttgtgagaTATCTGAATGGCGTTATGTGACAAAGGTAGAACAGTGTATGTTTGAACTCCGCCTGGACACTTGTGatgattcagttttttttgttaagttgTTTCCTTTCCTGACATGATGATAATAAGCAAGACCTCCTTCATAATAACCATGCATTTACTCACTTCGCACAGGCTTTA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU74500 True 1117 lncRNA 0.51 2 2715528 2716915

Neighbor

gene id symbol gene type direction distance location
AMCG00019907 NA coding upstream 45515 2666705 ~ 2670013 (+)
AMCG00019904 exosc2,exos2,LOC106566956 coding upstream 52368 2658045 ~ 2663160 (+)
AMCG00019905 prdm12b,LOC107688643,LOC105030201,LOC106587007,LOC107731029,LOC108423597 coding upstream 59495 2650937 ~ 2656033 (+)
AMCG00019906 NA coding upstream 79283 2632245 ~ 2636245 (+)
AMCG00019908 fubp3,LOC106566971 coding upstream 83863 2620970 ~ 2631665 (+)
AMCG00019910 NA coding downstream 25786 2742701 ~ 2768063 (+)
AMCG00019916 gsna,LOC107708352,LOC107595697,LOC107556937,LOC107686887 coding downstream 73858 2790773 ~ 2810001 (+)
AMCG00019917 NA coding downstream 135294 2852209 ~ 2866964 (+)
AMCG00019915 barhl1b,LOC107708351,LOC107595696,LOC105902520,LOC107556939,LOC100712077 coding downstream 152790 2869705 ~ 2876818 (+)
AMCG00019921 NA coding downstream 193329 2910244 ~ 2918881 (+)
G59557 NA non-coding upstream 81398 2583694 ~ 2634130 (+)
G59467 NA non-coding upstream 534459 2180603 ~ 2181069 (+)
G59460 NA non-coding upstream 548088 2164521 ~ 2167440 (+)
G59459 NA non-coding upstream 551924 2161935 ~ 2163604 (+)
G59440 NA non-coding upstream 680734 2034561 ~ 2034794 (+)
G59625 NA non-coding downstream 70995 2787910 ~ 2788239 (+)
G59638 NA non-coding downstream 108676 2825591 ~ 2826637 (+)
G59646 NA non-coding downstream 166799 2883714 ~ 2885416 (+)
G59700 NA non-coding downstream 314963 3031878 ~ 3034341 (+)
G59714 NA non-coding downstream 390885 3107800 ~ 3109882 (+)
AMCG00019884 NA other upstream 1606532 1074816 ~ 1108996 (+)
G59305 NA other upstream 2269998 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 245593 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 524393 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 2106898 4823813 ~ 4856929 (+)
G60137 NA other downstream 2638857 5355772 ~ 5361863 (+)
G60132 NA other downstream 2641549 5358464 ~ 5359365 (+)

Expression


Co-expression Network