G59700


Basic Information

Item Value
gene id G59700
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3031878 ~ 3034341 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74654
TTATACCACACTGTAGAGTTTTATTAGATGGGTGTCTCCAACATAATAAACAGTGCTCTCAGGGTAGGGACAAGCTGTTGTTCCATTATACAAAAAGACACAACAAGATCGACAAGGAGAAACAAAAGCTAGGGACAAGAAACCGGGAACTCACAATTACTGTATTATAAACgtcagatatatttatatattaatttataatttcataagaaaagaaaatgtacaatgctACACATGACACTAtgtacaaatcaataaataaagctggGACGAGAAAatccaaaaaaactaaaagtaaaagCAAGTTACAAAGGACATttcatcatctttttttttttcttgtacaaaaaaaaaatacaaaagaaaaaaacaaccaaaacactGCAATTCGTTAGAAAAGTTTGttatttacttcatttttttcttttcaagtaagagaaaaaaaatggcacCAGGTTTTGGACAATATTCGCAAAAGGGTCACAGGTTCTGTGGGCGGCAGTCTCTGGTACACGTCGCGGGCAGGGGCTGTTCTGCGTGTGTTCGGGGGTCCTTCCCTCGATCTTTGGTGGAGATGATTAAAAACAGTGAGTGGTTCTGCAACTGAAGACCAGAATCTCCTTTGACGGAGACTCGGCGATTACGGAAGTCTGCAGAAAGCCGGTATTTTTAGAGTCACTTGAATTTGATGGCCGTTCAGAGCTGAACGGCGAGGCGAAGGAATCCTGTTAAAACACCCATTGTGCGGACAATTCCAGTTTAATAGGCATGGAGATGAAATCTATTAGACACGAATAAGGGACTAATGAGATCTGAGCCAGCGCCGTCTTCCTCTCCTCCGTCTGCAGTCCCTGTGCAACTCTGCTGAGGTCCAATGCAAAGGTCCTCAAAAGAGGCATCTTCATTGCCTGTTTCCATCGGCTCAGTGTTTGTTTGGGTTCACCGTCGGCGTGGGAGTGGATTCTGGCAGCACAGGGTTACTGCCGATGCCGTCAGCGGAGAAGAGCGAACTGGTACGGGAGGGATGTCAGTGGTGTGAATAAACAGTTGACGGGAAGAGAAGACCCAGGTCAAGATGTTTGGTCTGGCCGCCTTCACTTGAGGCGGGACGGGGACGCGTGTCCGCAAGGTCAGAGGCGCCCCCCTCACCAGAGCTGTCCTCCCTCGCCTTCCTGCTGCGGTTCTAGAGAGACCATCAGTTGTTTTTACTCCCGAAAAAGACAATTGTCCCGGCTGTCCGGCAGTGGAGTCCTCTGCGAGCGTCCTGGGTGCAGTACAGGGGCGGTGGACGTGCCAGAACCAGGGAACCGTCAGCCCCTGGACGAGAGACGGGCCAGCGGCATTGTGGGTAGTCACATGAAACAGTGTCACGGTCTGGGCAAGCATTCCCAAATGATGTGTATATCAACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74654 True 1411 lncRNA 0.47 2 3031878 3034341

Neighbor

gene id symbol gene type direction distance location
AMCG00019924 NA coding upstream 403 3024389 ~ 3031475 (+)
AMCG00019925 NA coding upstream 11101 3016234 ~ 3020777 (+)
AMCG00019926 NA coding upstream 26973 2995864 ~ 3004905 (+)
AMCG00019921 NA coding upstream 112997 2910244 ~ 2918881 (+)
AMCG00019915 barhl1b,LOC107708351,LOC107595696,LOC105902520,LOC107556939,LOC100712077 coding upstream 155060 2869705 ~ 2876818 (+)
AMCG00019930 LOC107573633,LOC104949698,LOC107679461,LOC108251755 coding downstream 95588 3129929 ~ 3141283 (+)
AMCG00019929 LOC103370734,LOC104955211 coding downstream 108106 3142447 ~ 3147034 (+)
AMCG00019932 NA coding downstream 114753 3149094 ~ 3157541 (+)
AMCG00019931 endog coding downstream 124256 3158597 ~ 3161191 (+)
AMCG00019935 NA coding downstream 159446 3193787 ~ 3196215 (+)
G59646 NA non-coding upstream 146462 2883714 ~ 2885416 (+)
G59638 NA non-coding upstream 205241 2825591 ~ 2826637 (+)
G59625 NA non-coding upstream 243639 2787910 ~ 2788239 (+)
G59578 NA non-coding upstream 314963 2715528 ~ 2716915 (+)
G59557 NA non-coding upstream 397748 2583694 ~ 2634130 (+)
G59714 NA non-coding downstream 73459 3107800 ~ 3109882 (+)
G59715 NA non-coding downstream 82177 3116518 ~ 3116819 (+)
G59716 NA non-coding downstream 82873 3117214 ~ 3117452 (+)
G59717 tbc1d13,LOC102788004,LOC106562828 non-coding downstream 83181 3117522 ~ 3117909 (+)
G59718 NA non-coding downstream 85471 3119812 ~ 3120189 (+)
AMCG00019920 NA other upstream 62283 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 1922882 1074816 ~ 1108996 (+)
G59305 NA other upstream 2586348 441598 ~ 445530 (+)
AMCG00019934 NA other downstream 206967 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 1789472 4823813 ~ 4856929 (+)
G60137 NA other downstream 2321431 5355772 ~ 5361863 (+)
G60132 NA other downstream 2324123 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 3072653 6106994 ~ 6114196 (+)

Expression


Co-expression Network