G59746


Basic Information

Item Value
gene id G59746
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3199622 ~ 3200478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74715
TTCCTAAAGAGTAAATTATTCAccactgcagttttattagaGGTAGGGTTACTTCCAAAGTCAGAGAACGACCGATGGTAAACTCTGAGGTCCTCTCACCTGTCTGGCGGTCCAAAGCCTGGGTGAACTGGTTGATTGAAGGAGGCACCTTCAGACGCTTGTACAGGATGGACCTCTGCCTCTGCAGCCTGATGTAGCGAGGCCACTTCACGAAGCGCGTCAGATCACGCTTTGGCTGGATATCCTGACGATGCCATAGTTCTTGGGCCTCTTCTCGAACAAGGGGTTGACTACTTTCTTGGCCTCGTGTTTCTTGGCCACAGAAGGGGCCGGCGCCACCTTCTTTCCCTTAGCCTTCTTCCCCTTCGGCTGAAAGGAGGGAAAAGATGGGTTACCAACTGGGCAGCATTAGGACAGATGTAAACCCACCACAGGGCCGCGGGCGCCGAG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU74715 True 450 lncRNA 0.53 2 3199622 3200478

Neighbor

gene id symbol gene type direction distance location
AMCG00019935 NA coding upstream 3407 3193787 ~ 3196215 (+)
AMCG00019931 endog coding upstream 38431 3158597 ~ 3161191 (+)
AMCG00019932 NA coding upstream 42081 3149094 ~ 3157541 (+)
AMCG00019929 LOC103370734,LOC104955211 coding upstream 52588 3142447 ~ 3147034 (+)
AMCG00019930 LOC107573633,LOC104949698,LOC107679461,LOC108251755 coding upstream 58339 3129929 ~ 3141283 (+)
AMCG00019937 med22 coding downstream 1508 3201986 ~ 3207356 (+)
AMCG00019936 usp20,LOC106562719 coding downstream 10779 3211257 ~ 3234415 (+)
AMCG00019948 ttll11,LOC107693816,LOC102779474,LOC107579646 coding downstream 382595 3583073 ~ 3598555 (+)
AMCG00019951 NA coding downstream 856017 4056495 ~ 4072047 (+)
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding downstream 1323878 4524356 ~ 4555905 (+)
G59718 NA non-coding upstream 79433 3119812 ~ 3120189 (+)
G59717 tbc1d13,LOC102788004,LOC106562828 non-coding upstream 81713 3117522 ~ 3117909 (+)
G59716 NA non-coding upstream 82170 3117214 ~ 3117452 (+)
G59715 NA non-coding upstream 82803 3116518 ~ 3116819 (+)
G59714 NA non-coding upstream 89740 3107800 ~ 3109882 (+)
G59800 NA non-coding downstream 279302 3479780 ~ 3480109 (+)
G59821 NA non-coding downstream 447851 3648329 ~ 3651107 (+)
G59835 NA non-coding downstream 488322 3688800 ~ 3689000 (+)
G59836 NA non-coding downstream 490357 3690835 ~ 3691175 (+)
G59837 LOC107557202,LOC107674335 non-coding downstream 491267 3691745 ~ 3692036 (+)
AMCG00019920 NA other upstream 230027 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 2090626 1074816 ~ 1108996 (+)
G59305 NA other upstream 2754092 441598 ~ 445530 (+)
AMCG00019934 NA other downstream 40830 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 1623335 4823813 ~ 4856929 (+)
G60137 NA other downstream 2155294 5355772 ~ 5361863 (+)
G60132 NA other downstream 2157986 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 2906516 6106994 ~ 6114196 (+)

Expression


Co-expression Network