G59857 (LOC100136012)


Basic Information

Item Value
gene id G59857
gene name LOC100136012
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4039515 ~ 4039920 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74871
ggtggggatggtgttctttcctcctgctccaaACAcagcgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttggcaaacttcagacgggcctgtacatatGCTTTCTtcagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttatttttt

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74871 True 386 lncRNA 0.49 2 4039515 4039920

Neighbor

gene id symbol gene type direction distance location
AMCG00019948 ttll11,LOC107693816,LOC102779474,LOC107579646 coding upstream 440960 3583073 ~ 3598555 (+)
AMCG00019936 usp20,LOC106562719 coding upstream 805100 3211257 ~ 3234415 (+)
AMCG00019937 med22 coding upstream 832159 3201986 ~ 3207356 (+)
AMCG00019935 NA coding upstream 843300 3193787 ~ 3196215 (+)
AMCG00019931 endog coding upstream 878324 3158597 ~ 3161191 (+)
AMCG00019951 NA coding downstream 16575 4056495 ~ 4072047 (+)
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding downstream 484436 4524356 ~ 4555905 (+)
AMCG00019961 NA coding downstream 519386 4559306 ~ 4587941 (+)
AMCG00019958 NA coding downstream 563375 4603295 ~ 4621533 (+)
AMCG00019957 aif1l coding downstream 591121 4631041 ~ 4650566 (+)
G59849 NA non-coding upstream 88105 3951130 ~ 3951410 (+)
G59845 NA non-coding upstream 193085 3845999 ~ 3846430 (+)
G59841 NA non-coding upstream 310818 3728372 ~ 3728697 (+)
G59840 dab2ipa non-coding upstream 316069 3722891 ~ 3723446 (+)
G59838 NA non-coding upstream 346056 3693057 ~ 3693459 (+)
G59936 NA non-coding downstream 667644 4707564 ~ 4734675 (+)
G59955 NA non-coding downstream 710545 4750465 ~ 4752896 (+)
G59956 NA non-coding downstream 718365 4758285 ~ 4758647 (+)
G59959 NA non-coding downstream 756654 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 952718 4992638 ~ 5028847 (+)
AMCG00019934 NA other upstream 788108 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1069920 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 2930519 1074816 ~ 1108996 (+)
G59305 NA other upstream 3593985 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 783893 4823813 ~ 4856929 (+)
G60137 NA other downstream 1315852 5355772 ~ 5361863 (+)
G60132 NA other downstream 1318544 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 2067074 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 2142779 6182699 ~ 6187889 (+)

Expression


Co-expression Network