G59936


Basic Information

Item Value
gene id G59936
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4707564 ~ 4734675 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74978
GGGGGCAAACCCAGCGAAGACGCAGCTAATAAAAACCCATTCGGGGCCCCCGCCGCCGGAGGGTTTGGACAAGTCAATCAAGCAGCAGGGTCTACCAGCCTGTTTGGGAACAGCGGTGCGAAGGCATTTGGATTCGGGGGGGGTACCTCTTTTGGTGATCAGAAGGCCAGCGGGACGTTCAGCACGGGAGGTGGAAGTGTGGCGGCACAGGGCTTCGGCTCCTTTGCCAGCCCCCCCAAATCAGGTGGTTTTGGTGGTGCACCCGTGTTCGGCAGTCCTCCAGCCTTCGGGGGCTCCCCAGCATTCGGAGGGGCACCTGCTTTTGGTTCCACCCCGACTTTCAACAGCCCTCTGGGCCCATCATCAGCAGGCAAGGTCTTTGGAGAGGGGACTGCAGCTGCCAGCGTTGGAGGATTTGGATTCGCCTCGGCTTCCAGCGCTCCGAGCTTCGGCAGTCTGGCCAATCAGAACACTCCCTCCTTTGGCAACCTGGCCCAGCAGGGCTCGGGCTTCGGGGCCCAGAGCAGCACCGGGTTCTCCGGGTTCGGGACCTCGGGAGGAGctttcaCAAGTGGCGGATTTGGAACAACCAATCAACTTACACCCAGATGGCCAGGACTGCAATAGGAAACTACAGTacttttgtgcatttttatttagtcCATCTAGCTCAGTTTActtaatttaccttttttttatatataaatatatatgtgtgtgtgtgtgtgtgtgtatttccagAAATGGGTTGTCTAATAAAGCGAGACACTGATGCAAA
>TU74979
GGGGGCAAACCCAGCGAAGACGCAGCTAATAAAAACCCATTCGGGGCCCCCGCCGCCGGAGGGTTTGGACAAGTCAATCAAGCAGGGTCTACCAGCCTGTTTGGGAACAGCGGTGCGAAGGCATTTGGATTCGGGGGGGGTACCTCTTTTGGTGATCAGAAGGCCAGCGGGACGTTCAGCACGGGAGGTGGAAGTGTGGCGGCACAGGGCTTCGGCTCCTTTGCCAGCCCCCCCAAATCAGGTGGTTTTGGTGGTGCACCCGTGTTCGGCAGTCCTCCAGCCTTCGGGGGCTCCCCAGCATTCGGAGGGGCACCTGCTTTTGGTTCCACCCCGACTTTCAACAGCCCTCTGGGCCCATCATCAGCAGGCAAGGTCTTTGGAGAGGGGACTGCAGCTGCCAGCGTTGGAGGATTTGGATTCGCCTCGGCTTCCAGCGCTCCGAGCTTCGGCAGTCTGGCCAATCAGAACACTCCCTCCTTTGGCAACCTGGCCCAGCAGGGCTCGGGCTTCGGGGCCCAGAGCAGCACCGGGTTCTCCGGGTTCGGGACCTCGGGAGGAGctttcaCAAGTGGCGGATTTGGAACAACCAATCAACTTACACCCAGATGGCCAGGACTGCAATAGGAAACTACAGTacttttgtgcatttttatttagtcCATCTAGCTCAGTTTActtaatttaccttttttttatatataaatatatatgtgtgtgtgtgtgtgtgtgtatttccagAAATGGGTTGTCTAATAAAGCGAGACACTGATGCAAA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0001822 kidney development biological_process
GO:0072001 renal system development biological_process
GO:0001655 urogenital system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74978 True 778 lncRNA 0.55 6 4707564 4734675
TU74979 False 775 lncRNA 0.55 6 4707564 4734675

Neighbor

gene id symbol gene type direction distance location
AMCG00019963 NA coding upstream 29679 4658354 ~ 4677885 (+)
AMCG00019957 aif1l coding upstream 56998 4631041 ~ 4650566 (+)
AMCG00019958 NA coding upstream 86031 4603295 ~ 4621533 (+)
AMCG00019961 NA coding upstream 119623 4559306 ~ 4587941 (+)
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding upstream 151659 4524356 ~ 4555905 (+)
AMCG00019962 NA coding downstream 33440 4768115 ~ 4768663 (+)
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding downstream 60758 4795433 ~ 4795807 (+)
AMCG00019966 uck1,LOC102793675 coding downstream 126420 4861095 ~ 4887003 (+)
AMCG00019969 NA coding downstream 155103 4889778 ~ 4896490 (+)
AMCG00019973 NA coding downstream 254865 4989540 ~ 4992117 (+)
G59857 LOC100136012 non-coding upstream 667644 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 756154 3951130 ~ 3951410 (+)
G59845 NA non-coding upstream 861134 3845999 ~ 3846430 (+)
G59841 NA non-coding upstream 978867 3728372 ~ 3728697 (+)
G59840 dab2ipa non-coding upstream 984118 3722891 ~ 3723446 (+)
G59955 NA non-coding downstream 15790 4750465 ~ 4752896 (+)
G59956 NA non-coding downstream 23610 4758285 ~ 4758647 (+)
G59959 NA non-coding downstream 61899 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 257963 4992638 ~ 5028847 (+)
G60072 NA non-coding downstream 439761 5174436 ~ 5175779 (+)
AMCG00019934 NA other upstream 1456157 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1737969 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3598568 1074816 ~ 1108996 (+)
G59305 NA other upstream 4262034 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 89138 4823813 ~ 4856929 (+)
G60137 NA other downstream 621097 5355772 ~ 5361863 (+)
G60132 NA other downstream 623789 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1372319 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1448024 6182699 ~ 6187889 (+)

Expression


Co-expression Network