G59955


Basic Information

Item Value
gene id G59955
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4750465 ~ 4752896 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75000
tattcattgAAAAAACAggatttctgtatttcattgtatttcatttttgtgcATTTCACAGTTTCCAATGTTTGCCAGTAATGTCCCATTTTCAAGTATCAACGTCAGTgacaacatattttttcttagttttttatgCTGCAATATAATATAGCAGAAGATTTATCTGAAACCCAAAGCCAAGAAATAATTAGTGTTTGCTACTTTAGTTAACCCTTTGCTTGCCAACTGTGCTGTATATCTAGTATTAAATTATTCCATGTTATGACATGCCTGCATTGCACAGTGTCTGTTTGTATCCCCAACAGGGATAttctcataaaaaaatataggtCTAATTTCACTAATAAGTCCCACAGTGCTAAGCAAAGGATTATAGTAACAAAACTGATGAAGCTGCCGTCATAGGGTAGGCTGCAATACATAATTGGCCAAGTATTGAATTTGTCATTTCAAGTATAATGCAGAGATCGAGAGGCtgttaagataaataaatagaaaatcaaTATTATGTTTAAACCGAGTCATAAAAAAATGACTTCACAGTAGTATCAAAGCATTGTGACCAACTGAAGATATTGTAAACAATGCAAGCCAAGTGTTGCCCCCCTGTACCCCTAGAACTGGACGAACGGACTCTCTGTCAGCCTACCAGGCACTGCTCACAGAATGGGAGAACCTTGTGGCATCATGGGTGGGGAGAGTAAAAGGCAGGGTGTGCCAATAATGAGATCCATCGCAGGATGCTGTTTATAGCACACCCAGCGTGCCTGCACTCCCACTGATAATCCTTTAGATCAGGTGGCCTCTCAACAATGTGctaaaagcttaaaaaaaaacagaagtctgGGAAGTGGGGGGTTTCAGATGCTGAAGATTGAGGAACAGCTCAGGGAAGGCCAAAACACTGCAGAGTGACACCAACAACAAATTTCTGGCCAGTCATCTAAATCCCTCAGGCTAGAAGTGGGAACTGTCAGAATGGGGAAAACACTCTAGAACTAACTGTGAAAGTGATAatactgcaaaaaaacaacaacactgagaTCAAAAATGGAGGTAAGGACCACATGCGAATCGCTGGACTGAAGAGAGGATGAATTCATAGGACTGGTCAACTCCATTCTTACTTAGACCTGTTTCTTTTGGGGTATGGAGCCAGTTACTACAATGTAAGGCTGCTTTTCAACACAACAAGATCCTTTAAACTAGTGTTTCAAACAGGTCCAAGGTTACTATCTGAGCAGgtgaattttgtattttccctGTATATCGAACACATCAGAGCATCAGCTTCTGATAATACATTGGGGGAAAACAACAGCTAATTAGGCAACATACAGCATCATATTGAGTTCATGCTTCTAACAGCAATGGGAGCACCtttgaatgaatgaacaataacaaaataacacaccTTCCTCCGGTATTCAGACCGAGGTATCTAGACCTTGCACTCCAAAAGTTACATCAAAAATCCTCTTTCTTGCATCACTATCAGTAGTGTGGGATACAGAGTTTTCTCTCAGGCTCTTTTGAAAAACAAGAGTTACACAGACAGTCAATACTCTCCCAGGCTCTTCTGTGCAGCAGCCCACTATATTCAAAAGTAATGATCGGACTTCACTGACCTGCATTACACTGCAAATACAGCATTGCTTCAGCAAGACTAGGAAGGCCTGTAATCTAGTTGGGAATATTCTAAAAACAGTAGATCTCTGTTGTCTACTATGTCCAATTTGTTCAGAGGTGGACAAGGTCCAGTGctatatgttattttgtttagcagTCAAATATCATTACTGAATACATCTGTCTGGAGagtcattttatttacattcctCAGTAGAAATGCTTTTGAAACTCAACAGTGTCCGTTCTGCAACcatgtggggggaaaaagtgacagaaaaacactgaagacaaCTTTCCTGTTGAGGAAATAAAAATCCTTCAGGGATTTACCTCTCTGCAGCTCAGTATAACATCACTGCTCTCTTACCCCAAACTAATGCAtgatttaatttgcatgtttttcttgggtcgtttgttttgttcatttaccCCACAATAGACAATCTGACGAGCTGATGCAGCACAGACCTACACCCCCGCAGAGCTCCAGCCCAGACTCCTGTCTCCCCCGTTGCAACCCAGATCCAGGCAACACACCCAGGGCAATCAAACGTATTCTATAGTATATTGCAGCTTCAAGATGTGACAGCGAGTAAGCTGTTGATTCATTATGAAACACATTGTTTAAAGATGCAGTATCTCTCGGCCATCAGCACATTCTGCACACATTGATCTCagaaagggaggagagagggaatggGCCCCAAGGACAAATAGAGTAAAAGTTGGCCAAAATATAATTAGCCCAGGAAAATTACTCAAAGTGATAGTAATTGTATCATGAAGCACAAATACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75000 True 2432 lncRNA 0.40 1 4750465 4752896

Neighbor

gene id symbol gene type direction distance location
AMCG00019963 NA coding upstream 72580 4658354 ~ 4677885 (+)
AMCG00019957 aif1l coding upstream 99899 4631041 ~ 4650566 (+)
AMCG00019958 NA coding upstream 128932 4603295 ~ 4621533 (+)
AMCG00019961 NA coding upstream 162524 4559306 ~ 4587941 (+)
AMCG00019959 lamc3,LOC107718641,LOC107700933,LOC107757520,LOC107596886,LOC107655895 coding upstream 194560 4524356 ~ 4555905 (+)
AMCG00019962 NA coding downstream 15219 4768115 ~ 4768663 (+)
AMCG00019965 LOC107672533,LOC107731020,LOC107552623,LOC107740807,LOC107587726 coding downstream 42537 4795433 ~ 4795807 (+)
AMCG00019966 uck1,LOC102793675 coding downstream 108199 4861095 ~ 4887003 (+)
AMCG00019969 NA coding downstream 136882 4889778 ~ 4896490 (+)
AMCG00019973 NA coding downstream 236644 4989540 ~ 4992117 (+)
G59936 NA non-coding upstream 15790 4707564 ~ 4734675 (+)
G59857 LOC100136012 non-coding upstream 710545 4039515 ~ 4039920 (+)
G59849 NA non-coding upstream 799055 3951130 ~ 3951410 (+)
G59845 NA non-coding upstream 904035 3845999 ~ 3846430 (+)
G59841 NA non-coding upstream 1021768 3728372 ~ 3728697 (+)
G59956 NA non-coding downstream 5389 4758285 ~ 4758647 (+)
G59959 NA non-coding downstream 43678 4796574 ~ 4800283 (+)
G60038 NA non-coding downstream 239742 4992638 ~ 5028847 (+)
G60072 NA non-coding downstream 421540 5174436 ~ 5175779 (+)
G60201 NA non-coding downstream 943731 5696627 ~ 5696853 (+)
AMCG00019934 NA other upstream 1499058 3241308 ~ 3251407 (+)
AMCG00019920 NA other upstream 1780870 2962508 ~ 2969595 (+)
AMCG00019884 NA other upstream 3641469 1074816 ~ 1108996 (+)
G59305 NA other upstream 4304935 441598 ~ 445530 (+)
AMCG00019967 prrc2b other downstream 70917 4823813 ~ 4856929 (+)
G60137 NA other downstream 602876 5355772 ~ 5361863 (+)
G60132 NA other downstream 605568 5358464 ~ 5359365 (+)
AMCG00020001 NA other downstream 1354098 6106994 ~ 6114196 (+)
AMCG00020000 NA other downstream 1429803 6182699 ~ 6187889 (+)

Expression


Co-expression Network