G60272


Basic Information

Item Value
gene id G60272
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6165113 ~ 6172480 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75384
ACCTTTGTAAATCCAATAAACATGTATACTCTTGATATCAGCTAATTTTAAGCTTGATAGCAATTTACCTAAATCTGATTTCAACCTTCTGCTACATAACCACTTAAACATTCCTGCTatcaaacattcaaaaacagcttCCGGACAATTCAGTTCACCCAGCCTTAATTCTGAATATGATGCTTATAATAACTATAGATCTTTATTTAAAGAGAGCTTCAGCTTTAGATGATATAAACAGATACAATGGGGTTCTGCCAAATTTTATACATGAATTGTGTGGTTGTCACCCTACAAATCTATTGTAAGATTTCCCTTACACCATGAGACATGCGTATAAACTTCTCCATTCCACCTTTCACAAcctaatgtaaatatttaatggtgTAATTTTAACCTTAACAATATTAACATACAATTTCAGCTACACAGTACTGGTCCGCCTCCCACCAAAATCCTCCCTCACAGACAAATGTCTGCTTTTGTAGAAGAAACTAAACACATTTGATAAAGATTTCTTTAAAGCAGACTGCTATTTTCCCAATACACTGAACATTCAGACTGCAGTTGATggtaatttttgttgttgtttagagAATGCTGAGGGACTAATAAATGGGTACATCAGAGGAAGATTCTCCGAAGCATGTTATGAAAAGCACGTGCAAGCAGTCATGTGCACCACTTACAGATAGGAGTGTTCATACTTAAAAATAACCTACTCCACTGCATGAGTAtccttacaaaataagaaaagatgtgggacataaatagataaattatatatacataggtCTTAAAGTCTGGCAAGGCCTTATTGACTCAAGATTACCAATGTAATGTACCAAAATAGTTatgctgatgaaaacaaatgtgacaaAACCAAGACAAGAGTACTTGCacttcagattttaattttctgCCCCCAAACTGTCCGTACAGACACCGGGCACTAGATGCTGAAATAGATACCCAATGCTCAATTAATGAGTGTTGCATGATTATGTTTTTCCTGTGAACTTTTAAAGTTAACCCCCATAGCACCCAAGATAATGGCATAGTAatgatgtaaataaatataacattataaaaaataaaaagcctctGGTAAGTTTGAAAAGCTGTGACTGTGACATTGGACCCACCACTAAAGTAGAAAAACACTGCCACGTCAAATAAAATTTTATGAAAGCCACAGATACAGGTGAATTGCCAAAGGGTTCCATCTTTATTTTAAGtccagccaaaaaaaaaaaaaaacttgggtGTCCCAGGCTTAAGTGTATCAATACCCTAGAAACTCCAAGAGATGCTTTAAAGCACAGCTAAAAATAGATTCAGCTTTAATcactttgaaatggaaaataagaaatCACTCAAATGACCATGGAAAAAATATGGTAATtaagtttgcaaaaaaaaaaaatctggatcAACTTTCTCCAGTAGATCAATCCATGCCAAAcccaatatttttaaaatcacagcaatttgggattttatttgtgtgtatgtggaaATCAAGTCTGAATGCCTTCATTCTTCAGCTTGGCAATGAAACTGAATATTCCGGTTCACCAGTGGGAACCGGGCGAGATCAGCCCCGTTGGTACAGGGAGCTGACTTCGAGGCTTTGTGCTCATTTCTTCTTGGGAACGGCCTCGAGGGGTAGTCCAATTTCCCTCCCACGTAGCTTCATCCCAATGGCTCTCTCAATCTTGCCCAAAACCTGGTTGTTAGGGATTGCTTTCCCACATTCATAATCTGCAATGATCTGGGGCTTTTCGTTGATTTTAGTGGCCAGGTCTTTCTGTGTCATTCCCCTCTCCTGTCTGCCCTTCTGGATGACTTTGCCCACCTCCAGCGAGACTCTCTGGTGGTGCAGCTCCTCTGTCTCCCGATCCAGCTTGGCTGTGTTTTTGGTCACCaagtgctgtttgttttgtcctGCAGCCTGTTTAGATTTCGCCTGCGCCGCCGTCGGGCCCTTCTTCCTCAAGACAGTCACGGTATCCCAGTCACTTTCTGCCATGgctaaactgtgtgtgttttaagatcTTTACTACAGgctgatttttaaaatggaCGTGTTACAGAATAGCAGGCTTCCTCCCAGCTGCACCCACACTACTCCTCACAGCAGCACGCTTCTCCTGAGCTTTATTGAAACCGGGCTCGCTGACAGCGCTGGGGCGGAGAGCTGTGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75384 True 2209 lncRNA 0.40 4 6165113 6172480

Neighbor

gene id symbol gene type direction distance location
AMCG00020004 NA coding upstream 37707 6126999 ~ 6127406 (+)
AMCG00019999 NA coding upstream 133073 6023287 ~ 6032040 (+)
AMCG00019998 LOC106533851 coding upstream 191641 5961221 ~ 5973472 (+)
AMCG00019991 NA coding upstream 818215 5342576 ~ 5346898 (+)
AMCG00019988 NA coding upstream 832082 5320935 ~ 5333031 (+)
AMCG00020009 NA coding downstream 29528 6202008 ~ 6212464 (+)
AMCG00020008 dnm1a,dnm1,LOC108423695 coding downstream 52469 6224949 ~ 6267200 (+)
AMCG00020010 NA coding downstream 108043 6280523 ~ 6291842 (+)
AMCG00020007 hspa5 coding downstream 166050 6338530 ~ 6341784 (+)
AMCG00020006 ppp6c,Ppp6c,LOC102783418,LOC102313764,LOC106570422,LOC107587376,LOC100701794,LOC102784428 coding downstream 176107 6348587 ~ 6358927 (+)
G60273 NA non-coding upstream 4542 6156793 ~ 6160571 (+)
G60270 NA non-coding upstream 9914 6154947 ~ 6155199 (+)
G60257 NA non-coding upstream 65212 6099476 ~ 6099901 (+)
G60228 NA non-coding upstream 174622 5990230 ~ 5990491 (+)
G60215 NA non-coding upstream 372233 5792469 ~ 5792880 (+)
G60276 NA non-coding downstream 6065 6178545 ~ 6179635 (+)
G60324 NA non-coding downstream 187364 6359844 ~ 6382808 (+)
G60354 NA non-coding downstream 310354 6482834 ~ 6483995 (+)
G60363 olfml2a non-coding downstream 397900 6570380 ~ 6572561 (+)
G60431 NA non-coding downstream 779973 6952453 ~ 6955093 (+)
AMCG00020001 NA other upstream 50917 6106994 ~ 6114196 (+)
G60137 NA other upstream 803250 5355772 ~ 5361863 (+)
G60132 NA other upstream 805748 5358464 ~ 5359365 (+)
AMCG00019967 prrc2b other upstream 1308184 4823813 ~ 4856929 (+)
AMCG00019934 NA other upstream 2913706 3241308 ~ 3251407 (+)
AMCG00020000 NA other downstream 10219 6182699 ~ 6187889 (+)
AMCG00020052 NA other downstream 1694120 7866600 ~ 7884548 (+)
AMCG00020053 NA other downstream 1871795 8044275 ~ 8051147 (+)
AMCG00020105 rpl28,rl28 other downstream 3611637 9784117 ~ 9788052 (+)
AMCG00020122 urm1 other downstream 4308054 10480534 ~ 10499506 (+)

Expression


Co-expression Network