G61338


Basic Information

Item Value
gene id G61338
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12126842 ~ 12129571 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU76741
TGAATGAAACTTTATTGCTTCTTGATTTCAGAATCCCAGTTTACTGACATcagcaatacataaataaaagtgtcACCTCAAACCGTTACAGTAAAAAATATCATATTTACATCTGCAAACCAGGGAACAGAAGATGATGCatcgtttttattttctcctttgctccaagaaaacattttacaaaagtaaACATCAGGAAAACACGTGGAAATACTGCCTTGATGTTGGTTAGTCAATTGACAAACCTCTCATTGTAAAGTCAACCCTTATGAAGTGTCCCATTTCAACCCCCACAATCATTAACAGTGACAGCTTCAGCATCTATCTTCTTActcttgtgttattgttatgattgACTATTTTAGCATTCattgatttacttttattatttctatcCATCCCGCCATTCATTTTCCAGTACAGGGTCAGGGTACTTTTAATCTATACTTAATGCAATTTCAACGGATGGAAATTTCCATGCGTCCGAAACCTggaaactgtacttatttaatTCTAAGCAGATGGAGAGAGGCTGACAAGCAGTGACATCACTTCAAggagggaaagggaaaaaaaaaaaaaaaaacatgctgggATTAGTAAACCTGCTCCTCACAGAGCCGTACTGCAGGACATTCAGTCTCAGGGGTCGCCCGCAACAGACTGATGTGCGTCCAAGCGCTTCCATTGGTCACTATTCTCGCACTTTCTGTGGTCCTCAGTTCCATCCTTCCTTCCACCGCAAAATGCCTTTCAGATGTTCCCAGCTTCCCCAAGAATCCTTCTGCCCTTGAGAGAGATTCCCAGTTCTACATCATCATAATTTCCTACTCCCTCTCTCAATGTTCTGGATGCTGTGCACCCTGTGCTCGGACTGGGAAAAGCCCAGCCCAGGAAGCGCAGTGCTCTCCAGCGAGGGATCTCTAATCAATACATTAACAATAGCTGTAGCATTACAGTCACCCTGCGGAGACAACGCTCGGTTTATCGCCGGTGCGCTGAGCGCTGTGGTGTTTACTTGTTCCACAACATCAAGTCAAGAatcaaaaatacatcacagGGATTTCTGGTTGATGAATATTGATCAGAAATTCACATAATTGGATCTCATTTCGCAATCCATCCACCattaccttttatttattcattcattcattcaatctTTTTCCCCATACAGAGGCATCAGATTCTCTGTACAAAGCAGCTTATTATTAACAATGTTAAAtctgggaaaggaaaaaaattacaTCTATACCATTCCTATCATCTTTACTTGCATCAGAAGCTCTCCAGTGGAGACAGCCAcatgtttttacatatataatttaaatttcctattgttttctttaaaatcctTAATTCATTCTTTTTGTATGGTTGCATCATGCACAGAGCACTAAGAACCAGTTTGGTGCTTCAGCATAGGATACTAGAATGACTTCTGCAAAACACCAAAGCAAAGATTTATCCTTAAATTGTATTCCATAGTGCAGCAGATTGAGGCTTTTGGGACAGTACCCTCAACTTCTGGTATTACAAATCCAAAAGATGATTACCGattgaattgaaatgtatatagcGCCTTGCattaatgacaaaaaaaatgaaggttCAGACAATGGAAACTCAAAATCATCCTCAAATCTAGTCCGCAGTCTTGCAGGTTGTATAGGTCTCTTAATATCAAAGCCTGATTACATAATGGGGGGGTGATAGAAATCTAGAGATCAATTAACGAATTGAGAGGGCACGGACAATTAAAAGAACCCTGGGGTCGACAAGGTCTGGGTTTGAGAACTGTACAAAGCATTTCAGtacaaaccatttaaaaatgataatttttttttttttttttttttttttttgtagtctgATCcctgggggggaaaaaagcaaaacacttttGTATTCTATGCCGAGTACCTTAATGCCACGCAGTGGAGGAGACAGTGGGAGttctttattacacatttttccaGGTCTTACAGGGCTTTGAGGTTGGAAAATAGAAGTTAAGCTTGTCTACATCGATATACGACCTGGCCCTGGAGAAACATGATTACAGTCTAACTACTAAAACACCCTGTGTGCTCTCCACTGCATGCCCCTGGcaacaaaagataaaaaaacaaaccaaaaaaacacaagaatatccagcaaagtatattcatattcaaGCATCAGAGCCTACACtccaattaatatattttgtatataaaagaaaaacaaatgttttaggACAATGCAGAGAGTCAAGAGTTAAtgtgctgaaaaagtgaatgtcaCTGAGGACTTTAACCTTGGGTAAAAGTagtggaaaggaaaaaaaaacaataaccttGAAAACAAGACTTTACATCCAACACCTGGAGTGTGAGAATATGAAAGATCACATTTGAAGGGTTTGCGTTTGTCGGTTTGTTGCGTGTTTGTCCATGATGCCGGGGCCCAGAGCCGCGCTGCTCTGTCGAAGCAGTTTGAGTCCCACCCAGGAGCTCGGCCCGGTGTGGCCCAGCCCAGGCAGGTCAGATTGCACACTCTCCAGAACGTGACCCAACTTTGCATACCTCCCCCGCACCCCCCTGCCTCCCTCAGGCCATGCTCTCCCGCTCCCCCCTCATTTCCGAAGGCCCGTTGGATACTTTCTTCACCTTTTTCACTCCCTCCGTCATCCCGGTGGTCGTGGTGACCCTAA
>TU76745
TGAATGAAACTTTATTGCTTCTTGATTTCAGAATCCCAGTTTACTGACATcagcaatacataaataaaagtgtcACCTCAAACCGTTACAGTAAAAAATATCATATTTACATCTGCAAACCAGGGAACAGAAGATGATGCatcgtttttattttctcctttgctccaagaaaacattttacaaaagtaaACATCAGGAAAACACGTGGAAATACTGCCTTGATGTTGGTTAGTCAATTGACAAACCTCTCATTGTAAAGTCAACCCTTATGAAGTGTCCCATTTCAACCCCCACAATCATTAACAGTGACAGCTTCAGCATCTATCTTCTTActcttgtgttattgttatgattgACTATTTTAGCATTCattgatttacttttattatttctatcCATCCCGCCATTCATTTTCCAGTACAGGGTCAGGGTACTTTTAATCTATACTTAATGCAATTTCAACGGATGGAAATTTCCATGCGTCCGAAACCTggaaactgtacttatttaatTCTAAGCAGATGGAGAGAGGCTGACAAGCAGTGACATCACTTCAAggagggaaagggaaaaaaaaaaaaaaaaacatgctgggATTAGTAAACCTGCTCCTCACAGAGCCGTACTGCAGGACATTCAGTCTCAGGGGTCGCCCGCAACAGACTGATGTGCGTCCAAGCGCTTCCATTGGTCACTATTCTCGCACTTTCTGTGGTCCTCAGTTCCATCCTTCCTTCCACCGCAAAATGCCTTTCAGATGTTCCCAGCTTCCCCAAGAATCCTTCTGCCCTTGAGAGAGATTCCCAGTTCTACATCATCATAATTTCCTACTCCCTCTCTCAATGTTCTGGATGCTGTGCACCCTGTGCTCGGACTGGGAAAAGCCCAGCCCAGGAAGCGCAGTGCTCTCCAGCGAGGGATCTCTAATCAATACATTAACAATAGCTGTAGCATTACAGTCACCCTGCGGAGACAACGCTCGGTTTATCGCCGGTGCGCTGAGCGCTGTGGTGTTTACTTGTTCCACAACATCAAGTCAAGAatcaaaaatacatcacagGGATTTCTGGTTGATGAATATTGATCAGAAATTCACATAATTGGATCTCATTTCGCAATCCATCCACCattaccttttatttattcattcattcattcaatctTTTTCCCCATACAGAGGCATCAGATTCTCTGTACAAAGCAGCTTATTATTAACAATGTTAAAtctgggaaaggaaaaaaattacaTCTATACCATTCCTATCATCTTTACTTGCATCAGAAGCTCTCCAGTGGAGACAGCCAcatgtttttacatatatatatatatatatatttaaatttcctattgttttctttaaaatcctTAATTCATTCTTTTTGTATGGTTGCATCATGCACAGAGCACTAAGAACCAGTTTGGTGCTTCAGCATAGGATACTAGAATGACTTCTGCAAAACACCAAAGCAAAGATTTATCCTTAAATTGTATTCCATAGTGCAGCAGATTGAGGCTTTTGGGACAGTACCCTCAACTTCTGGTATTACAAATCCAAAAGATGATTACCGattgaattgaaatgtatatagcGCCTTGCattaatgacaaaaaaaatgaaggttCAGACAATGGAAACTCAAAATCATCCTCAAATCTAGTCCGCAGTCTTGCAGGTTGTATAGGTCTCTTAATATCAAAGCCTGATTACATAATGGGGGGGTGATAGAAATCTAGAGATCAATTAACGAATTGAGAGGGCACGGACAATTAAAAGAACCCTGGGGTCGACAAGGTCTGGGTTTGAGAACTGTACAAAGCATTTCAGtacaaaccatttaaaaatgataatttttttttttttttttttttttttttgtagtctgATCcctgggggggaaaaaagcaaaacacttttGTATTCTATGCCGAGTACCTTAATGCCACGCAGTGGAGGAGACAGTGGGAGttctttattacacatttttccaGGTCTTACAGGGCTTTGAGGTTGGAAAATAGAAGTTAAGCTTGTCTACATCGATATACGACCTGGCCCTGGAGAAACATGATTACAGTCTAACTACTAAAACACCCTGTGTGCTCTCCACTGCATGCCCCTGGcaacaaaagataaaaaaacaaaccaaaaaaacacaagaatatccagcaaagtatattcatattcaaGCATCAGAGCCTACACtccaattaatatattttgtatataaaagaaaaacaaatgttttaggACAATGCAGAGAGTCAAGAGTTAAtgtgctgaaaaagtgaatgtcaCTGAGGACTTTAACCTTGGGTAAAAGTagtggaaaggaaaaaaaaacaataaccttGAAAACAAGACTTTACATCCAACACCTGGAGTGTGAGAATATGAAAGATCACATTTGAAGGGTTTGCGTTTGTCGGTTTGTTGCGTGTTTGTCCATGATGCCGGGGCCCAGAGCCGCGCTGCTCTGTCGAAGCAGTTTGAGTCCCACCCAGGAGCTCGGCCCGGTGTGGCCCAGCCCAGGCAGGTCAGATTGCACACTCTCCAGAACGTGACCCAACTTTGCATACCTCCCCCGCACCCCCCTGCCTCCCTCAGGCCATGCTCTCCCGCTCCCCCCTCATTTCCGAAGGCCCGTTGGATACTTTCTTCACCTTTTTCACTCCCTCCGTCATCCCGGTGGTCGTGGTGACCCTAA

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76741 False 2695 lncRNA 0.41 2 12126842 12129571
TU76745 True 2706 lncRNA 0.41 2 12126842 12129571

Neighbor

gene id symbol gene type direction distance location
AMCG00020156 NA coding upstream 131731 11992192 ~ 11995111 (+)
AMCG00020154 NA coding upstream 182442 11943279 ~ 11944400 (+)
AMCG00020152 ralgps1,LOC105905312,LOC108412534,LOC107727327 coding upstream 203212 11880082 ~ 11923630 (+)
AMCG00020150 ralgps1,LOC108412534,LOC107723240 coding upstream 315000 11768917 ~ 11811842 (+)
AMCG00020149 NA coding upstream 411742 11713547 ~ 11715100 (+)
AMCG00020157 NA coding downstream 27970 12157541 ~ 12172006 (+)
AMCG00020163 ptpa,LOC102782294 coding downstream 56263 12185834 ~ 12198647 (+)
AMCG00020165 NA coding downstream 70557 12200128 ~ 12202687 (+)
AMCG00020166 NA coding downstream 239202 12368773 ~ 12371712 (+)
AMCG00020172 NA coding downstream 252242 12381813 ~ 12395040 (+)
G61336 NA non-coding upstream 110095 12016496 ~ 12016747 (+)
G61335 NA non-coding upstream 110691 12015698 ~ 12016151 (+)
G61333 NA non-coding upstream 114435 12011960 ~ 12012407 (+)
G61332 NA non-coding upstream 114966 12011661 ~ 12011876 (+)
G61331 NA non-coding upstream 117742 12008792 ~ 12009100 (+)
G61434 NA non-coding downstream 285428 12414999 ~ 12468293 (+)
G61435 NA non-coding downstream 288239 12417810 ~ 12506599 (+)
G61440 NA non-coding downstream 354806 12484377 ~ 12504599 (+)
G61460 NA non-coding downstream 452690 12582261 ~ 12585656 (+)
G61568 NA non-coding downstream 700401 12829972 ~ 12852064 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 826810 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 1157244 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 1371467 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 1627336 10480534 ~ 10499506 (+)
AMCG00020105 rpl28,rl28 other upstream 2338790 9784117 ~ 9788052 (+)
AMCG00020171 rpl12 other downstream 279391 12408962 ~ 12414951 (+)
AMCG00020177 NA other downstream 390193 12519764 ~ 12542261 (+)
G61491 NA other downstream 486221 12615792 ~ 12619817 (+)
G61675 NA other downstream 1220106 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1657443 13787014 ~ 13792944 (+)

Expression


Co-expression Network