G63951


Basic Information

Item Value
gene id G63951
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24088514 ~ 24093237 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU80015
TAAAactttaaatctattttattgaTATAGATAGCAGCAAGtttacagaaatataattgcaaGAGTATACAAATGCcccaacaaaagcaaaatacatttcgttttttaaatttaatatttaacaagtTGTTCACATGGTAGCTAAAACACATATGCAAACTGTACTCCCCAGACCCACCTATGTCAGTGCTATATGTCAACTACTGAAGCCATATACAGAGACAAAAGACTTCtacaggtaattaaaaaaacaaaacaaaaaaaaaaaaacactttcacatCAAACAATAGCCAGACAGGCAAAAGGGACACTCACTGAAAATAGTGTGCAAATTGACTGACTTgataatacttaaaataataataataataataataataaaagaaaaaattggTGACATTCACagatgtctgttttgtttgcaaTATCTGAGCCCTTCCATGTCATGGCACCGTTCTCACAATGAAACTACTTCCtgccaaagaaataaaaataaaaatgaaaaagccttaagttaattaaataattgcaataattaCAGAACTTAAAGTCATTGTTTCCCCCTTTTCCTCTGACTTAAGAATCACAAGAGGCGAAATagaaaaatagtttatttaaaaaagtaacagATTTAGTTATATCTAGTCAAGCTGCATAGCAGTTGGACTGGAAAAAAGGCTTCAATTGCACTTGTTCTTGCCAACATAAATGCAAAGAAGtgcttgttaaaataaatttggATGTATGGTGAAAGGTCTACATTAACAGCGTTTTAGACATTGATCTGTTGGAGGGGAGGTTTTCTTTGTAGCAAACCTACTAAACCAATGGCTTGATAATGGCAATTTGTCATTTcccaaactaaaataaaaaaacgaacaaGCCAACAATCATTATagttatacatataaataaattaaacactttgACCAATTCATTGCTGTGCTTTGGGGAAATTGAAATAACAGGCAGCAACAGGGCcacatgggggaaaaaaaattgttGTCATCATAAATACACGGTTCATCAAAGTACACTGGGTTTCCCCCAAAAACAGGGTATCATTGCTACCTGCAAAATTCCAATGACAGcaaatttatataatgtatcaaTTCATTTACAAAGGAAATATGTTTCCATATTAAATTCAGAATTACAGCAAAATTCTAAGTTTATTGTGGCCTTTAGGTAGAATTTGtgccctttaaaaacaaaacattgtattatatgtaggcatgtatgtatgtataattggCCCCTCAAATATAGCAAACTCAATGTTAAAACAGAAAGTGAACATTTGAaaaggggccctgctggcatgCTGGAGTCCAGCATCAGAATGTCTGTTGTGTATGTTTGTCTTTATATCATGTTCAGAGATTATACTACCATATTCCATTGCCAAAGCAACAAAATAGGTCTGTTTTATCTGAATTGGTCCCGTCTCTGATGTAGCAGCATTGTCTTGGACAAATGCAATTCACACCATTTACGAGGTATTGCCtgtattctatattttaaaaaataataattttgatgtGTATttgattatctttttttatacattacatGTTGGTATGGCTTTATATTTGCCTTCTGCCCCTCCCTCATCTCTTCCAGTGCTTATTATTCCAGTGTTGGTCTGGTGCAGAAGAGGACATTCTAGCCATGGCTTTTATGGGTCAACAGTCTACAAAAAGCTGCATTATTGTTGTTACACACGTCTCAaggacaaatacaaaataaaccagaaaAATACTTCACTGTTTGGTTAGATTGACCTAATCAGCTatataacacaatttaaaagcaattttaacATCAAAGATACTTGTTGCCTGAGAGATTTCTCCAATATGCCTTCATAACACCTATTGAAATGACAGTGTCAGCGGCGTAATTTCAACTAAGGGTTACACTGATCAAGTGAAAGCTGTACTGAACGCTGACATGTTAGCTTGAGTCACTTTATATGGATCTGTCTCCATGGGAACACCACAGGCAATAacagttatattaaaaaagcaaatataacaaggtggagagaaaaaaagggaaatggagAATACACATACTGCTGTCAAGACACTTATCACAACACTGAGTGAGCAGAATGCTGacactgttttaaatgtgaataaattagATATGATGGTGGAAAAGAGGTATTAGCTGAAAACATGACaagtaaaacattatatatgtatgggAAATACcaatttcttaaattaaaaaaaacacattgatgataaatggaaatgaaaacaagagtTGAATTGACAAGAGTTAAAGAAAGCTAATTACAGACAGGTCTCTTCTCCCATGCACTTGCAGTTGCAGTTTCCTTATCTGCAGTAGGTCCCTTAAAAAATGATCTAAAAGCAAAGGTCTGAAACACTGTGCAGGGGAGTACAGTGAACAGGTGTGTTCACAGACATCTTGGCCCTCACTGATCACCTTGAATGAAACATCAATGTAAAGTCTAGAACAGTTGTGtgttcttattaaaaatgatttgttgCAGTAATAGTAATTCTAAtggcaagaaaaagaaaagaacgaCCAACAGCAACAAcgagaacaagaacaagaattacaaaaaacaaaaatgctgagCTCCCCTTGCTGGCCTCACAGACAGAAACGAAGGGCCACCCCCTGCTTCAGAAGACACCTGCCCGCAGccttcaatgaaaacaaaacggCACCACGCCAGCCTGCCACGACAAACAGGTTACCCAAACACATcgagagggggggagaaaaacgTTTGTCTGCTTCAGAATAATGTGACATGAAATGCACAgctatgtacaaaataaatttaTTCCAAACAACCTATACTTTAGGTGACTTTACTCACCCCTCCACCATCCACCCCTTCCCACCGTGTAACAAGTGAAAATCGAACCTACCCCCCTCAGCCATAAAACTGGCATTCAGGGGGTGGAATTGAAACACGGTAGCGTCAGAAAGACCCAAAGTGCCAGTGGGGTCAAACATCTTCACCCATTGCCACATGCCTCTTCCTACTCTGCTCACCATGCAGGCAGCTGGTAAAGCACAAGGATTCATCTCCACCCCATGATATTCATATAAACCCAAATTATAGTGTACAGAGAACGCAAAAAGGTCTTAACCCACCTGTCTGCAAGTCTTTATTTCACCAAATAGCACCATCTAGCGCtgtggaaacaaatacaaacaaaaccaaaaacccaaaaaaaaaaaaaaaaaaactaaaactaaaaaaaacaccagctgCAGAATAGCTGCAGTTTTGTAACACGGCTGCAAAGCAAAATGTCCTACTGAATACAGAGgcctttttctttgtattattctttcCTTGTATGATCTGAAACAAATCTGTATGATCCAATTCTTGGCAAAAAGGTGCCAAAAGCTGAGAACATGTCACAAAAATTACAACGGAGAAGacataaccaaaacaaaaaaaagtatattacagTCGTACTTCTGTAGTACAAATAACAATATACTCTATATTATtcacttaaaacacacacacacacacacacatatatatttatacatgtatgtgtacatgtacccacacacatacaaccacaaacacacattcacaccaAAAAAAGAATTATGCATCtgtaatataaatgaatgaCCTAAATGCTGGTCTATTTATCTCTTTCTCTGTACCTTCCTTGACTTCATCTCCCTTCATATTGACTGAGGGGGGTAAAAATGTTGGAATTTCAGGGGCAGGATAGGTGTGGATGGGATAGGGTGGGCAAAATACGAACCAGCTGTTTATAAAACTTTCGTCATGGCTCAAAAACATGCATGAGTAAGAaaatagtataaatatatacagtaaacaattgGAGAGATATCCATATAACAATTAAAAGACTTACAAATAATCTCTAAAAATATGGACATAAATAGCTGACTAACAAATTTATGAAGAGGGTAGATAGGGAATAGCTGGTCACAaagtaaagcattttaaagtgcTGAAGGTATAATAatgtcaaaatattatttttaaatgttttttgtttttttttgtttacctcAAAAGGgtattttcttgaaaataaagagaaaagctTTACAAGCCGTTTTACCGCACACAAAGTCCTTAATAACTCAGAACTTTTTGTATGCTTGATTGTTGCAcacctttaaaaatgttaaatcggCGACTTCTGTGCTGAGAAGTTTAACAAACATTCCATCATGTGATATGATGCTTCTACAGCTGTAGCTAAAGAGCCAAGCTAAACCAGAATCGCCCTGACAGCTGTGGGGAACCTTTTTTTAGACCTTCTATTCCTAGGCATATCACAAGTTAGCCAAACTGCTCTCCCAGCCCACCCCTCGTCCCAAATCCAGTTCATTCCTGGCTGCTCCTCAGTGCCAGTCAAGCGGGTGTTGAGATATAAAACCGCATCTAAATGAAAAGTGGGTTTTAGAGTGATGCGCAGCTGAAGTCTTGATGGGTCATATTCTTCAGACAGGACCCTGGCAGTTAGCACGTTCCACTTTCTCTCCCACACTCTCTTCACAATCTTAACTGGGGTCCTGTTGGATCCTAGGGGtgcaaaggagagagagaagacagaaaGAGGGTGTGAACATGTGCTGAATGGAAGCAGTTTGTTTATGACAATCATTTAGAATAGAAGTGGTACTGACCAATAAGACCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80015 True 4700 lncRNA 0.36 2 24088514 24093237

Neighbor

gene id symbol gene type direction distance location
AMCG00020528 NA coding upstream 25839 24057094 ~ 24062675 (+)
AMCG00020522 NA coding upstream 116940 23925180 ~ 23971574 (+)
AMCG00020520 NA coding upstream 230711 23813512 ~ 23857803 (+)
AMCG00020517 zfhx3 coding upstream 406212 23657711 ~ 23682302 (+)
AMCG00020519 zfhx3,LOC105888974,LOC106533552 coding upstream 477368 23608590 ~ 23611146 (+)
AMCG00020530 psmd7,LOC107584693,LOC107659147,LOC107553010 coding downstream 67040 24160277 ~ 24163714 (+)
AMCG00020535 NA coding downstream 109077 24202314 ~ 24210374 (+)
AMCG00020536 NA coding downstream 122834 24216071 ~ 24225069 (+)
AMCG00020534 LOC104940465,LOC106520303,LOC103466051 coding downstream 132764 24226001 ~ 24232399 (+)
AMCG00020532 NA coding downstream 152304 24245541 ~ 24249251 (+)
G63948 kars,LOC107738348,LOC107584690,LOC107679917 non-coding upstream 12039 24075049 ~ 24076475 (+)
G63947 NA non-coding upstream 16354 24070716 ~ 24072160 (+)
G63898 LOC108433019,LOC103398424 non-coding upstream 188760 23898507 ~ 23899754 (+)
G63890 NA non-coding upstream 190759 23850350 ~ 23897755 (+)
G63789 NA non-coding upstream 1001581 23086378 ~ 23086933 (+)
G64009 NA non-coding downstream 139502 24232739 ~ 24242677 (+)
G64048 NA non-coding downstream 395667 24488904 ~ 24565492 (+)
G64069 NA non-coding downstream 500893 24594130 ~ 24597787 (+)
G64121 NA non-coding downstream 598760 24691997 ~ 24695554 (+)
G64122 NA non-coding downstream 603365 24696602 ~ 24696809 (+)
AMCG00020529 LOC107090538 other upstream 20057 24033037 ~ 24068457 (+)
G63939 NA other upstream 32922 24051989 ~ 24055592 (+)
G63786 znf821,LOC107747380 other upstream 1013569 23070411 ~ 23074945 (+)
AMCG00020505 NA other upstream 1026365 23053798 ~ 23062149 (+)
AMCG00020487 NA other upstream 1679021 22356174 ~ 22409493 (+)
G64046 NA other downstream 385598 24478835 ~ 24482114 (+)
AMCG00020572 NA other downstream 969136 25062373 ~ 25076690 (+)
AMCG00020573 NA other downstream 984905 25078142 ~ 25084873 (+)
AMCG00020585 NA other downstream 1365859 25459096 ~ 25472886 (+)
G64372 NA other downstream 1457674 25550911 ~ 25553320 (+)

Expression


Co-expression Network