G64274


Basic Information

Item Value
gene id G64274
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25261926 ~ 25264235 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU80404
GAGACTGGAGTGCGCTCTGCCACAGTCACAGAAGATTCCTGAATGACAATTATAGAAGCTTCTCCACATTTCGCAGACATTCTTCTCCCTGGCTTGCTCTAAAATTAGCTTATTTCTTAGAGTGAGTTCATTATCGTTAACACAACTGCAGTGTTGTCTTGGATATAATCATTAATACTGTcattatgtttttggttttcattttaaaattaaacaacattGAACAAGTCTTGCAGGGATTCGTATATAAGCCTCCTGTATGATTTATAGGACAGTACTTTTGCGTACAGGACAGTGATATTACAGATAGGATTTTATTAGTGGAATGACCTTGTTTTGCTGCAGTAGCAATGTCAAAACCTTGTGGAAATGCAAATCACTACGCTAACAGAATACTTTCCAGTCTAAAAGGTGTTTTAAGACTGCCTTCTTAGACACCTACTGTCTGCTTTCtattattcattaaatatttatttttctggtcaTGATAGCTAAACCCTAAAAGAGATTTTGAATGAGCGGACATACATGGTGAATGCTGTTCTTAGTGTTTCTTTGGTAACTGTAACCAGTGAAACGTCTCCATTCAAGCACTGCATTGTTAAATATGCCTGCTCATACACAATCTCCTGTGTTATCTTCTTAACACAAAACTCTTAGTATAGTGATACTTGTCTTATGAATACCACCCCCTTGGTATAAACCTTCATACTATTTCACTGAAAATAAGATTTAACTGTAATCCTTTTCCAGTAGTAACCCTCCACACACCATCATCTAGAGAAAAgtctaaaaacattttggatgCAGGGGGGAGGCAAATGATACGATCACATTTGTTACtggattattatttctttaaatatataaatacaacaaaacgtACAACTTACACATGCTAAAAGCCATTACTGTGTCTTAAAGTTgaaagaggagaagaaaaagcttatcagtttatatatttaaattatatatggttgcatttttctattttgttagGAAAGTCACAATTAATCTCTTCAGGTAGGATTGATACCATTAGATACAAGGCGGTATCAAGGAGTTTGGGTGCGAGTCCATAGGCTACCTTGTTTAGCCATCAGCTGAGCAGCACAGTAGAAAAGCACTGACAATCTGTTGCACCAGTCTGCAGAAATTGGCTCCCATTTGTGCTGATGAACTGAGATATATTCCTAGACATAGTGcggagttttgttttttctggctTCCCAGTGTGAAATCCACACAACAAATATTTAGAGGAAACTGTTTCCAGTGGAGGTGATTCAAACTCAGATCCCCTTTGCGATGTGCTCTTTCAATGTGCTGCACAAGGAAGGGGTGAACAATCCTCTGAGTCGTTACTGCGGCGTCAGAATTTCACATTCAATCACTCCAGAGAGttggcacagacagacagaggcacGTGTGAAGGTCCTCACTTGGGGCTGGTCCAGGGGATGCTAGGGAGAGGCAGGGTGTGCAGGTCTGGGACCCCCCCAGCATGGAGGACTCTGGCAGTGGAGAAGGGCTCAGAGGTCAGGGAGTCTTCCGGCGGGGAGACCAGCCACCCCTGGTGTGGAAGGGAGGACGAGGAATGGCTCTGCTGGGCACAGTCTGAGGACAGAATCATGAACAGCTGGGAGTCCATGGCAGAGAGGTCTGGGAGGGGTGGGTGGGGCATAGGGGGCCACAGGTAGGAGGCCGGAGAGAGTGGGGGTGAGGTATGCGTACTAGAAAGCCCATTGCTGGGCAGGGTGTGCTCTCCCAGGACACTGGCTTCCATGTGGGATTCAGGAGCAGACTTGTGCATCCCTGGAGGCACAGATGCCAGGCTAGACTGGGCCAGGGAGGGCTGCCTCACTGCCGGTGGCACTAAGCTCAGGAGATCTTCAGCAGTGTTGGGGGCTTCCAGTCTGGCGATAGCCTCGTCATTCAAGATGATGTCCAGATCATCCTGGCACAGCCCGTAGTGCCACAGCAGTTCCCAGATGCTGACGTTGGTGGGAAATTGTGGCCAGGCCTGTGGGCAAGGTGCCTCGGGAGGCCGGAAGATGTAGGGAGGCTCGTCCTTGCTGATGTTTGCCCCTATGACGGTGCTTTGGCAGGGCCCCTGGGCTTTGTGCCGGCTCTCTACCTGCTGCAGAAAGGCACGAGCACTAGGGTGCAGGACGTCAGTGCTGTCATAGAGCAGGGACAGGCTGTCCAAGGAGAAGCGCTCTTGTTTGGCTCTCTTCAACATGTGCTCCTCTCCCTCGGCATCCCTGTGGGCATAACAGCACCAATGAAACACTACAACAAACTGCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80404 True 2310 lncRNA 0.46 1 25261926 25264235

Neighbor

gene id symbol gene type direction distance location
AMCG00020574 NA coding downstream 260798 24972749 ~ 25001128 (-)
AMCG00020575 NA coding downstream 311053 24947221 ~ 24950873 (-)
AMCG00020566 znrf1,LOC106573647 coding downstream 415498 24843010 ~ 24846428 (-)
AMCG00020564 NA coding downstream 440865 24814766 ~ 24821061 (-)
AMCG00020565 NA coding downstream 461143 24791942 ~ 24800783 (-)
AMCG00020592 polr2c coding upstream 61558 25325793 ~ 25329845 (-)
AMCG00020591 LOC102778684,LOC107573013 coding upstream 66838 25331073 ~ 25348318 (-)
AMCG00020594 gabarapl2,LOC107560072 coding upstream 209020 25473255 ~ 25479762 (-)
AMCG00020597 NA coding upstream 287355 25551590 ~ 25552969 (-)
AMCG00020595 chmp1a,LOC106573671 coding upstream 301348 25565583 ~ 25574610 (-)
G64258 NA non-coding downstream 45233 25203124 ~ 25216693 (-)
G64238 NA non-coding downstream 160839 25100037 ~ 25101087 (-)
G64235 NA non-coding downstream 167600 25094031 ~ 25094326 (-)
G64221 NA non-coding downstream 197584 25064136 ~ 25064342 (-)
G64218 NA non-coding downstream 209474 25052204 ~ 25052452 (-)
G64340 NA non-coding upstream 197192 25461427 ~ 25461642 (-)
G64341 NA non-coding upstream 199305 25463540 ~ 25464116 (-)
G64342 NA non-coding upstream 200642 25464877 ~ 25465350 (-)
G64412 NA non-coding upstream 376335 25640570 ~ 25643373 (-)
G64418 NA non-coding upstream 427173 25691408 ~ 25779211 (-)
G64271 NA other downstream 19415 25242169 ~ 25242511 (-)
G64260 NA other downstream 50863 25209059 ~ 25211063 (-)
G64247 NA other downstream 122541 25121098 ~ 25139385 (-)
AMCG00020581 NA other downstream 142330 25111110 ~ 25119596 (-)
AMCG00020560 NA other downstream 485517 24753882 ~ 24776409 (-)
AMCG00020589 NA other upstream 8358 25272593 ~ 25284209 (-)
AMCG00020590 LOC108250636 other upstream 25267 25289502 ~ 25302981 (-)
G64298 NA other upstream 65849 25330084 ~ 25330570 (-)
AMCG00020604 NA other upstream 423040 25687275 ~ 25715457 (-)
AMCG00020614 NA other upstream 621815 25886050 ~ 25905598 (-)

Expression


Co-expression Network