G64394


Basic Information

Item Value
gene id G64394
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25640593 ~ 25643374 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU80553
ttgctTACATCGTACAGTACTCTATAAAGCAGCACACTGGCATAAaaagataaacattttatttacagaaactTGCAGCTATGCATTTGTAGTGTACATTTGACATTCAAAATTCAGGCTAACTTAATGTTAGTTCCAGTACAAATGAGTTTAATACACTTCAGCAGGAAAACATGTTGCATATCTTTGCATACAGATTGAGCAATTGAAGAGCTCAGACCACAGGATTCGGCTTCACCAAGAACCTTCCCTCCCGCTCTACACTCAGGGAATCTTGATGTAAAGATGTAAATATACATGGAGCTGCTGAGTGACACTCCACTTCTATTAAACTGCAAGTTCCTCTACGCTGATTAAATTATGATGCAAACTTGTTTTTATGGAAGGAAATCATATACATCACCCCCCGCCTCCCTGTTTTTCATGCAAACTACCCTTTTTACCCTCTAATTCATAAAAtggacaaacaaaaccaaataaaaaataaaaagccaaaaaATATATCTCCTCATCAATACACTTATATATAAATTAGTCTAATATTATATCTGAGTAGTAAAGAGGTTGCTATGCAAGTTCTCTACATCTTTCCATTATACAACTGCTTGCTGATGCACTCCGATCTTTTAAGATTGAATCGCCCCAAGGCAGAGAGCGTTATTGGCTCATCAttgaaattcaataaaataaataaaatggtattCACAGGGATTCCAGTGGATTTATCCTTCCCATGGTTGTTCAGGTATGTCACTTCACCTCAGTAGGAGAGAGGAGCCAAACCAAATATACAACGGAGATCTTCTCTCACGCCCGGCGTGCAGTCATTTCACATGATACTACAATTCAGTCAAGAATTCtgcttgaaaaaataaataacaatttgcaGATCTAAACTACATACATTCAGTAGTGCACTTACCATTTTTGGAAGAAGCAAGCActgtttaaaaattatatacttGAATCAAGTTAGATgtctacattttgtaaatatgaactggaattaatagaaataattaaaaaacaacactattgTCTACATGGAAAAGTATCAATGCCAGTGTTTGTAATGCTTACATTTACAAATGCGTAACAAAATCCACAGCCAACAACCCCCTGTGCCAGGAAAGTTACATGgatttacaacaaaaaataatctctgTGATGAATGATCTTGGTATAAATGAGGTAATTGCCATCCAGGTTTTGCTTATTTCAGATCTTTGTGGGTTCCTTGCCAAGTGATTCCTCGGGCAAATGCTGAGACAGTTACGGAGAGAACATTTGACATGTCTGTCATTTTAATATGCCATGTTACCTGAAGAAGtcaacatttttcataaatgAACAATGAACCTGAAAAGGTCTTCTGTGAGATAGTGTGCAAATGTGGGTGGGTACTGATGTGCAGTATAtatggacttttttttaaatatgcttcaGAATTGACATGCTATAACAAGTGAGGAAGCATTAAATAtctatgcatacacacacaaattgtcaacaaaaacatcaaaagtacactgaaaataattgaaacagAATGAGTATTGTACATCTCTGTGGATTGCAGTGTTACGAATAAGCAGTGCACATTGTTAAAGCAACATCCTGAACAGTAACATCAATACATTCATCTCCcagatttcaaaaacaaacccTGAGAAACCACAGCAGTTTTTATAACAGACTACAGAATAATAAATTAGACAATTCTTGTTTTTCAGAAGGACGTTCTGAAAGCAGATGTCAAAACATTGTCCTGCTTGTGATCAATCACCTCAGATGAGTCAAAATcatattcatgtaaaatgtgGGACTGAGGTTGTTGCTTTTTGAATTTTTAAGAGGGGGGGTTGACAATTATGGAACAACTGTACAGCAGAACACTGTTACCGAAGGATTTCCACATGGGCCAGGAATGATCGGTATTCTAGGGACCAACAGTGGTTCATCTATAATAGCCCTGCATTTTAGGTTAATCTGCTTCTCATTGGAAACCCGGTTGTAGCACTGTGCAGCTCATCTTTGCTGGGGGCCTGTGTTGTTGTAGTTGGTGGCGACGTGGTTGTAATTTTGTGCTACTGGCTCTCAGGAGATGACACTTGAGATTTCCTGCTGGTTTCTCAAGAGCCGTCTGAGCAAAGAGTTTGAGGCATATTCAACTATGCAACCTGGACAAAGATAATGGGACTGGGGCTGAGTTCAAAGCTCCTATGGCAaccccaaaacacaaaacaaacaaaataaaggctCTCAGTTtccaagtttgtttttaaatcccatGTCCTCTACTGATTTGCTTTTGTGCTAGAGCTCAAATTGGAAAGTTTTTCTAAATACCTACACTGGTTTATCACAAGGAATTGTatgacacagcacagcactgcaaaTCTGATCTGGTCTGTGTACATTGCCTTCTGTTAAAGTGGATGCAGAAGTGAAGCCCCGAGGCTCTGGCTTAACTGTGTTTTGTAAGACTATTCAAAAGataggcttaaaaaaaaaaaaacatggaaaactgAGAGGTAATACAATTTtacatggtttgttttcatcaatGTACTGATATTACATcagaaataaagcaataataatcacaaagcACAAGGAAATctctaaaatgtaatatatgctCTACAGAGTTTCTAAGTTCACCTACTATGTGGTCAAGAGGAAATCATGTAAGAGATGAATACGAacacaacatgaaaataaatttcaCTCTGGTTACCTTCTCTGGATTACATGTGCAGTGGGCTTTTGTGCAGGTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80553 True 2782 lncRNA 0.37 1 25640593 25643374

Neighbor

gene id symbol gene type direction distance location
AMCG00020599 NA coding upstream 30203 25601120 ~ 25610390 (+)
AMCG00020600 cdk10 coding upstream 51842 25579705 ~ 25588751 (+)
AMCG00020596 NA coding upstream 108230 25531176 ~ 25532363 (+)
AMCG00020593 NA coding upstream 148298 25487947 ~ 25492295 (+)
AMCG00020586 wwp2,LOC107740243,LOC108439047 coding upstream 182498 25405634 ~ 25458095 (+)
AMCG00020598 znf276,zgc:158366 coding downstream 38242 25681616 ~ 25687176 (+)
AMCG00020609 snta1,LOC107560074,LOC107728410,LOC107667670,LOC107744389 coding downstream 138674 25782048 ~ 25783248 (+)
AMCG00020608 sntb2,LOC106573669,LOC106560900 coding downstream 166792 25810166 ~ 25811675 (+)
AMCG00020606 sntb2 coding downstream 196330 25839704 ~ 25854564 (+)
AMCG00020607 vps4a,LOC106939979 coding downstream 211714 25855088 ~ 25861732 (+)
G64378 NA non-coding upstream 68831 25569390 ~ 25571762 (+)
G64362 NA non-coding upstream 104546 25535753 ~ 25536047 (+)
G64300 NA non-coding upstream 306911 25332259 ~ 25333682 (+)
G64297 NA non-coding upstream 310035 25330081 ~ 25330558 (+)
G64269 NA non-coding upstream 374386 25263406 ~ 25266207 (+)
G64406 NA non-coding downstream 78559 25721933 ~ 25728334 (+)
G64436 NA non-coding downstream 176017 25819391 ~ 25819782 (+)
G64457 NA non-coding downstream 250776 25894150 ~ 25895525 (+)
G64478 NA non-coding downstream 291531 25934905 ~ 25940113 (+)
G64555 NA non-coding downstream 551839 26195213 ~ 26197405 (+)
G64372 NA other upstream 87273 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 167707 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 555720 25078142 ~ 25084873 (+)
AMCG00020572 NA other upstream 563903 25062373 ~ 25076690 (+)
G64046 NA other upstream 1158479 24478835 ~ 24482114 (+)
AMCG00020603 NA other downstream 118761 25762135 ~ 25778982 (+)
AMCG00020621 LOC105904655 other downstream 411913 26055287 ~ 26096957 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other downstream 1772622 27415996 ~ 27418520 (+)
G64887 NA other downstream 3230256 28873630 ~ 28874072 (+)
G64908 NA other downstream 3365289 29008663 ~ 29009601 (+)

Expression


Co-expression Network