G64478


Basic Information

Item Value
gene id G64478
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25934905 ~ 25940113 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU80673
TTCAGATATACACTTTTATTGGTTTAAATAGTTTGTAATTctagtaaaaaacaacaaaaacaaacattaaaaacaagattGTGACATATGTACCAACCTTGCATCAGCAAAAAGAAATGTGTCAGTAGAGTGGAAAGAGGAAAGTTAATAGAATATTTCAAAGCCCGTTTCATTTGTaggttttTCTATGTATCAAAGCCTAATGACATTCAATTGACAACATGAATTCGTACCAATGCTTCACTTATTAACTAGTGTGGTAGAACATATGAACAATCTCTGGTCAAAACCTAGACAAATAAGAAGTCTGGGGGAAGAATATTAAAACTCTTAAAGCTCATATGATACCTGAATGTCTCAGGCATTACTTTTCCAGAAGTTTGACCACTGAgcaaaaatatgcaaattgaaAAAATTCCAACCACATCAATCCAATCTCAGAAAGCTCTGCCAGCAACTGAAGAACTGATTGAATCCAGGCCCTATATTTTACAATCATTTCACTTCGAATTCGTAATGTGATtcatgattaaaacatttaaaaggtttaaaaaaagttattaaaatgttataaaatgtcAGTTAAAATCTTTGTTTGTAGACAGTTTGTCAGACCACAAGTTGTACACTGgtcttattttataataaaatgctatgaaAATGAGGAATGTGTAAATTATTCAGTATTTAGGAAACATATAGGTCTTATAAATATTGTAGAAAGCAAACaaagtattatttataaagCTAGCAAATACACAAGGGTACGACAAAGTGTCCTAGTATATTAATGCCACATAAGTATCGAGagtgttttgattaaaataaccaGTTTGACAAGATGGGTGACAATCACAGATGGATTGAGGGACCATCAGCTGGACAGAAGCAGCCTATTGTTTCCTTGACTGGGTAGAACAGTAGGTTATTGTGGCTGTTTTTGTTCTAAGAAgtaaaaaaaagctgtttgttaaaaagaaGAACTTCATTACTACAGTGAAGGAGAACAGAGCTATCCTAGTCATTGGAGCTGccactgtcctgctctctgtACCAGCTCATTTGTCACACTCTAGGTCTTGCAGAGCGTCCGGCACCTGATCCTCATAGTGCTGCTCGCAGAACTCCTGGATCCGGTTACAGGCTTCCACCATCATATCCTGGGGTACCGTCACCACGATCCGGAAAAAATTGGGGTATTCAAATG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU80673 True 1207 lncRNA 0.35 3 25934905 25940113

Neighbor

gene id symbol gene type direction distance location
AMCG00020611 NA coding upstream 2763 25920639 ~ 25932142 (+)
AMCG00020616 NA coding upstream 49826 25877255 ~ 25885079 (+)
AMCG00020607 vps4a,LOC106939979 coding upstream 73173 25855088 ~ 25861732 (+)
AMCG00020606 sntb2 coding upstream 80341 25839704 ~ 25854564 (+)
AMCG00020608 sntb2,LOC106573669,LOC106560900 coding upstream 123230 25810166 ~ 25811675 (+)
AMCG00020610 cotl1,LOC107684658,LOC107587015,LOC107559813,LOC107722478,LOC107738394 coding downstream 32420 25972533 ~ 25989687 (+)
AMCG00020617 NA coding downstream 76778 26016891 ~ 26029449 (+)
AMCG00020624 NA coding downstream 280517 26220630 ~ 26230564 (+)
AMCG00020626 NA coding downstream 487813 26427926 ~ 26428763 (+)
AMCG00020629 NA coding downstream 502262 26442375 ~ 26471185 (+)
G64457 NA non-coding upstream 39380 25894150 ~ 25895525 (+)
G64436 NA non-coding upstream 115123 25819391 ~ 25819782 (+)
G64406 NA non-coding upstream 206571 25721933 ~ 25728334 (+)
G64394 NA non-coding upstream 291531 25640593 ~ 25643374 (+)
G64378 NA non-coding upstream 363143 25569390 ~ 25571762 (+)
G64555 NA non-coding downstream 255100 26195213 ~ 26197405 (+)
G64556 NA non-coding downstream 260951 26201064 ~ 26202040 (+)
G64557 NA non-coding downstream 267471 26207584 ~ 26207838 (+)
G64558 NA non-coding downstream 272767 26212880 ~ 26213093 (+)
G64559 NA non-coding downstream 273264 26213377 ~ 26213728 (+)
AMCG00020603 NA other upstream 155923 25762135 ~ 25778982 (+)
G64372 NA other upstream 381585 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 462019 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 850032 25078142 ~ 25084873 (+)
AMCG00020572 NA other upstream 858215 25062373 ~ 25076690 (+)
AMCG00020621 LOC105904655 other downstream 115174 26055287 ~ 26096957 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other downstream 1475883 27415996 ~ 27418520 (+)
G64887 NA other downstream 2933517 28873630 ~ 28874072 (+)
G64908 NA other downstream 3068550 29008663 ~ 29009601 (+)
G64979 NA other downstream 3524451 29464564 ~ 29465712 (+)

Expression


Co-expression Network