G64555


Basic Information

Item Value
gene id G64555
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26195213 ~ 26197405 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU80767
TGCTATATTGTTGTAAACCTTAATTGATAAAGAGCATTTACCAGTAGCATGTAACGACCAGTCTGTTCACCAAACAAGTGGAGCTTCAATACATTatgtagaaataaaacaatcaatatcGTACAAAAACACTGAGTTTAAGAGCCAAACTGACCTTCATATGAATCTATTCGGTAACAATAAGCACTCAGTTCCATGTCTAAGCTTGGCCCATGTCCTAAAACAACATTTATCATACTTTAAAACCCCTATTAGTAAGATCTAGAAAAGAATAAAGgtatactgaaataaattaccCTGTGCTTAGTCTCAGACTGGAATGTCTGTGCCATTTggaagaaataatgaaaaccaaaatccCTGGCAAACATTTATGTCTTCATGATCATACTTTCAATTTAGTTTGATAAAGCTCTGAAAACAGTCTAACACAAACATTACTGTGCCCTAGTTTAAACTGATTCCTCCTGCTTTTTAAACTGTCAGAAATGTCAGAAAGAATGCAGCAGTTCCTTAAAGACCAGCAGTGCTAAGCCAATTAACCACAACTGGTAtctattacaatataaaaccTCTTAATACACTGCAAAGCACTTGGACCACGGGAAGGATACAGAGAAAAAAACCTGCCATTTCAGAGATGGAAACTAAAGCTTATTTCCTCACAAACGCTCTGCTTCATGAAGTCTATGCTACTAGAACTTTACAAGAGTCAGGACCAAAAATAAGCTTTAAGAATGGATGCTTGTAGGATTCACCACATTTCTAATCAAATAAATTAGACTATAAACATACCTGTGACATAACAGGAGTAGCAGCCAGTGTCTAACATCTTTAAACCTCAAGGACTCTTGTTAGACAAACAGTTCATACCTGTCCTAAGGCTTATAGTCCCATGTCAAATAAGGCATATCTTATTATGTTGTTAGTATAGTGtagccttttttatttcaaactgtTCTCTCAAAAAATAGTACACCATTAAGGAGTAGTTACTTAAATACTGAACTACAACTCCTTAACAGGTTGTGtggggaaaatacatttctccaaGCTTGTTGCTTAAATGACCCATCTGCCATTTTTATGAAGATCTCTGCACAGAAGCTGCTGGGCAGCTCTGACCTGCAACATATCACCACAAGGACCTCCCAGCCCACCAGGCGACtgtcaatttaaatacacaggACCCAACACACTTATCAAACAGAATGCAAAAGAGCAAACTTAAGCAATATGCATTTCAGCATCTCACAGATAACCGAGTCAAAGATCATCAgcgttgatttattttatacattgacATTAAAAGACCCCAACAGAAATCGATGTTAATGGagacacatttaattttgttatttaccACACCAATAAGTacatggcaatgggccagacagaACTCTTGATTTAACATCACTCTAAAATGATGCAAGCAAGACTTAAATATTCAACTGGTTTTATAATTTAAGCGCTGAAGTGATAAGCAAACAAGTGGATCTTTCAAAAGGGAAGAAGTGTTTACACTTGAACATTAGAGTGATAGTTCAGTTATTGAGACGCAGGCCCTACTGTTTAAAGTATTCATCGAAGTTTGGCTTCAGTCTATAACATGGAagctatttttttccccactataAAGTTGCATGTATAGAAATAGAAGCAAACAAGCCCATACAAATCCTGCTCAGCTTCCTTCCAATGAGAGATTTTGCTCATTAGAAACATGTGGAAACACATCTTCTGGGCATTACAGAGACATCAGTCAGAGAGGTCATTTTGCAATCAATCTTTTGGTGAGCATTCACGTAGAACACACCTGAAATGTAATACTAAATGTTATTCTGGATTTGGTCTTGTTTAAAGGTAAAATGTTAACTCACTAATACATCTCTTAAGTGTGGTAAATTAAATGCTCCTAGTTTGTTCCTATTTTCAAGGCCCCCCCAAAATTCAAAAATGACAAACTATATCCTGTTGTGAAAccaggaagagagagatgaCCTCTGCTGGCTTCAGTCTCTGCTCTTTTACAGATGGCCATTCTGTTTCAATGAATTATCCCATTAATAGTAGCACAGTATATAGATATCCCATCTTACTAGTAAAACTATTTACAGGGGAGCAGATAAAATATAAGTTACAGTGACGTTCAGTTTTATAGAAACTGGAGCGTGGACACTATCCAGATTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80767 True 2193 lncRNA 0.36 1 26195213 26197405

Neighbor

gene id symbol gene type direction distance location
AMCG00020617 NA coding upstream 165764 26016891 ~ 26029449 (+)
AMCG00020610 cotl1,LOC107684658,LOC107587015,LOC107559813,LOC107722478,LOC107738394 coding upstream 205526 25972533 ~ 25989687 (+)
AMCG00020611 NA coding upstream 263071 25920639 ~ 25932142 (+)
AMCG00020616 NA coding upstream 310134 25877255 ~ 25885079 (+)
AMCG00020607 vps4a,LOC106939979 coding upstream 333481 25855088 ~ 25861732 (+)
AMCG00020624 NA coding downstream 23225 26220630 ~ 26230564 (+)
AMCG00020626 NA coding downstream 230521 26427926 ~ 26428763 (+)
AMCG00020629 NA coding downstream 244970 26442375 ~ 26471185 (+)
AMCG00020630 banp coding downstream 291901 26489306 ~ 26507324 (+)
AMCG00020631 NA coding downstream 694212 26891617 ~ 26904288 (+)
G64478 NA non-coding upstream 255100 25934905 ~ 25940113 (+)
G64457 NA non-coding upstream 299688 25894150 ~ 25895525 (+)
G64436 NA non-coding upstream 375431 25819391 ~ 25819782 (+)
G64406 NA non-coding upstream 466879 25721933 ~ 25728334 (+)
G64394 NA non-coding upstream 551839 25640593 ~ 25643374 (+)
G64556 NA non-coding downstream 3659 26201064 ~ 26202040 (+)
G64557 NA non-coding downstream 10179 26207584 ~ 26207838 (+)
G64558 NA non-coding downstream 15475 26212880 ~ 26213093 (+)
G64559 NA non-coding downstream 15972 26213377 ~ 26213728 (+)
G64561 NA non-coding downstream 19227 26216632 ~ 26217130 (+)
AMCG00020621 LOC105904655 other upstream 98256 26055287 ~ 26096957 (+)
AMCG00020603 NA other upstream 416231 25762135 ~ 25778982 (+)
G64372 NA other upstream 641893 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 722327 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 1110340 25078142 ~ 25084873 (+)
G64730 hsbp1,LOC102784925,LOC102222837,LOC103023435 other downstream 1218591 27415996 ~ 27418520 (+)
G64887 NA other downstream 2676225 28873630 ~ 28874072 (+)
G64908 NA other downstream 2811258 29008663 ~ 29009601 (+)
G64979 NA other downstream 3267159 29464564 ~ 29465712 (+)
AMCG00020684 NA other downstream 3306822 29504227 ~ 29575346 (+)

Expression


Co-expression Network