G65221 (gas8,LOC108276428)


Basic Information

Item Value
gene id G65221
gene name gas8,LOC108276428
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31480756 ~ 31481969 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU81567
ttgaagGATGTTTTGGACTCAAAGAACATTGCAATTAAGGATTTGCAGTATGAGCTAGCTCGAGTCTGTAAGGCACATAATGATTTACTACGGACATATGAAGCTAAGCTCAGTGCGTTTGGGATTCCAGTGGATGAGCTGGGGTTTAAACCTCTGGAGACTACAATATCTGGACAGACTCTTGGTCAGGGGCCTGCAGGATTAGTGGCTGCCCCGACATAACACAGACAGTCTAAATCAAATTGCTAGGTGTCCATAAAAAGATATAATCAAAACACTCTGCACAAACATCTCTTTTAATGGACACATTTACCCtttgtttgaatgtgtggagCTCGGCATTTTAAAGATAAGTCAATTTCGcatgttttatacttttatatattcaCTTTGTCATGGTACGTtgacaccaaaaacaaaaaggaaacatcTAGAATATCAAATATTTCTCAGtaccaaaataaactgaaatatttcatACTTGGTTCATTTAGCGAGTATGCCTATTAACTGACTTTTGTGAGAATTAAGTGGATGTTTGTGGATCCACAGGCAAAAGTGTATTGTGAAGCAATATAGgatccaaacaaaacaattatttattttttggtctttAACTAAAATGATATACAGTTAATGGAAATACTAAGCAGGTAAATGTTATAGTTGTGGAAGATGTGCTACTAACTGCATAGTGGGATATCCtgtcattaatatgaaataaatcagaaatacaatAGTGATA

Function

symbol description
gas8 Predicted to enable microtubule binding activity. Involved in cilium movement involved in otolith formation and otolith tethering. Acts upstream of or within muscle cell development and positive regulation of smoothened signaling pathway. Predicted to be located in ciliary basal body and cytoplasm. Predicted to be active in Golgi apparatus and microtubule. Is expressed in neural tube; otic placode; otic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 33. Orthologous to human GAS8 (growth arrest specific 8).

NR:

description
PREDICTED: growth arrest-specific protein 8 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81567 True 745 lncRNA 0.35 2 31480756 31481969

Neighbor

gene id symbol gene type direction distance location
AMCG00020712 NA coding downstream 32107 31435628 ~ 31448649 (-)
AMCG00020711 NA coding downstream 47803 31426521 ~ 31432953 (-)
AMCG00020705 NA coding downstream 328784 31146087 ~ 31151972 (-)
AMCG00020706 NA coding downstream 337353 31139693 ~ 31143403 (-)
AMCG00020699 NA coding downstream 720673 30758126 ~ 30760083 (-)
AMCG00020717 LOC108428436,LOC106927143,LOC105895635,LOC103149374 coding upstream 37256 31519225 ~ 31543659 (-)
AMCG00020716 NA coding upstream 62599 31544568 ~ 31545686 (-)
AMCG00020719 def8 coding upstream 64404 31546373 ~ 31560989 (-)
AMCG00020718 tubb3,LOC108431516,LOC107552791,LOC108272015 coding upstream 82864 31564833 ~ 31573696 (-)
AMCG00020721 NA coding upstream 112259 31594228 ~ 31594905 (-)
G65179 NA non-coding downstream 261012 31219543 ~ 31219744 (-)
G65178 NA non-coding downstream 262871 31212938 ~ 31217885 (-)
G65166 NA non-coding downstream 324491 31152419 ~ 31156265 (-)
G65109 NA non-coding downstream 650214 30830181 ~ 30830542 (-)
G65073 NA non-coding downstream 778583 30700486 ~ 30702173 (-)
G65267 NA non-coding upstream 166655 31648624 ~ 31648851 (-)
G65297 NA non-coding upstream 229565 31711534 ~ 31711764 (-)
G65314 NA non-coding upstream 274293 31756262 ~ 31756689 (-)
G65315 NA non-coding upstream 275482 31757451 ~ 31758500 (-)
G65337 NA non-coding upstream 303546 31785515 ~ 31803792 (-)
AMCG00020713 NA other downstream 67933 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 671910 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 742780 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 949620 30449745 ~ 30531136 (-)
AMCG00020685 bat1,slc7a9,LOC106592435,LOC102305828,LOC106596152 other downstream 1947639 29520191 ~ 29533117 (-)
AMCG00020746 NA other upstream 639916 32121885 ~ 32122933 (-)
G65549 NA other upstream 876269 32358238 ~ 32365142 (-)
AMCG00020767 NA other upstream 1072891 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 1125893 32607862 ~ 32610708 (-)
G65641 NA other upstream 1173165 32655134 ~ 32657019 (-)

Expression


Co-expression Network