G65246 (tubb3,LOC107552791,LOC108431516,LOC108272015)


Basic Information

Item Value
gene id G65246
gene name tubb3,LOC107552791,LOC108431516,LOC108272015
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31564833 ~ 31566359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU81596
TTCGTTTGACagcaatacatttattcaatATTCCCCCCCAGAAAATTGGCAAAaccagtacaaaataaaacaattaggcTGAAGGTCAGGGGAGTAGTGGGGaattcacattattaaaataaaggaattgAGAATTGCTAAAATGTAACTGTTGCGATTTAAATATGTTCCTTTGTTTGCACATTAGTATCAAATGTTAACTTGGGAAggtatatatagatttttttttctttcatgtacTATTTTGTTAGCAGGTTATGAAATATCAATAACAAGCAATGATATAGTCAGTGGACTAAGACTGACACTAAGAGTTAGCAGAGACTAACACCGggggggggtggcgggggggtggggataGGCATCTCGCCCTCCTCCTCTGCAGTGGCATCCTGGTACTGCTGATACTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCGGTGAACTCCATCTCGTCCATGCCCTCACCGGTGTACCAGTGCAGGAAGGCCTTGCGCCGGAACATGGCGGTGAACTGCTCGGAGATGCGCTTGAACAGCTCCTGGATGGCCGTGCTGTTGCCGATGAAGGTGGAGGACATCTTCAGGCCGCGGGGGGGGATGTCGCACACGGCCACTTTGACGTTGTTGGGGATCCATTCCACGAAGTAGCTGCTGTTCTTGCTCTGAATGGCTAGCATCTGCTCGTCCACCTCCTTCATGGACATGCGCCCACGGAACACCGTGGCCACAGTGAGGTAGCGCCCATGCCGTGGGTCGCAGGCTGCCATCATGTTCTTGGCATCGAACATCTGCTGGGTGAGCTCGGGCACCGTGAGGGCGCGGTACTGCTGGCTGCCCCTTGCGGTCAGGGGGGCGAAGCCAGGCATGAAGAAGTGCAGCCGGGGGAAGGGGACCATGTTGACAGCCAGCTTGCGGAGATCAGCGTTGAGCTGCCCAGGGAAGCGCAGCGAGGTGGTGACGCCGCTCATGGTGGCAGACACTAGGTGGTTCAAGTCTCCGTAGGTGGGCGTGGCCAGCTTCAGCGTGCGGAAGCAGATGTCGTACAGCGCCTCGTTGTCGATGCAGTAGGTCTCGTCCGTGTTCTCCACCAACTGGTGGATGGACAGGGTGGCGTTGTAGGGCTCCACCACTGTGTCCGACACCTTGGGCGAGGGCACCACACTGAAAGTGTTCATGATTCGGTCAGGGTACTCCTCCCGCACTTTGCTGATGAGCAGCGTGCCCATGCCCGAGCCCGTACCACCACCCAGGGAGTGGGTGAGCTGGAAGCCCTGCAGACAGTCACAGTTCTCACACTCCTTCCTCACCACATCCAGGACTGAGTCGACCAGCTCCGCCCCCTCTGTGTAGTGACCCTTGGCCCAGTTGTTGCCAGCTCCACTTTGC

Function

symbol description
tubb3 Enables netrin receptor binding activity. Involved in axon guidance and dorsal root ganglion development. Located in microtubule. Implicated in complex cortical dysplasia with other brain malformations 1 and congenital fibrosis of the extraocular muscles.

NR:

description
PREDICTED: tubulin beta-3 chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81596 True 1392 lncRNA 0.55 2 31564833 31566359

Neighbor

gene id symbol gene type direction distance location
AMCG00020714 NA coding upstream 60879 31496044 ~ 31503954 (+)
AMCG00020710 foxf1 coding upstream 145478 31413525 ~ 31419355 (+)
AMCG00020709 NA coding upstream 331209 31227122 ~ 31233624 (+)
AMCG00020707 LOC106951238 coding upstream 408994 31152401 ~ 31155839 (+)
AMCG00020704 NA coding upstream 433444 31109024 ~ 31131389 (+)
AMCG00020722 NA coding downstream 118770 31685129 ~ 31709788 (+)
AMCG00020723 NA coding downstream 147537 31713896 ~ 31720373 (+)
AMCG00020724 NA coding downstream 154503 31720862 ~ 31723055 (+)
AMCG00020729 wdr59,LOC107686576 coding downstream 159825 31726184 ~ 31753719 (+)
AMCG00020728 cfap20 coding downstream 187953 31754312 ~ 31758498 (+)
G65223 NA non-coding upstream 78931 31485583 ~ 31485902 (+)
G65163 NA non-coding upstream 415072 31146087 ~ 31149761 (+)
G65067 NA non-coding upstream 862676 30700454 ~ 30702157 (+)
G65063 NA non-coding upstream 915469 30648824 ~ 30649364 (+)
G65024 NA non-coding upstream 1576705 29986565 ~ 29988128 (+)
G65266 NA non-coding downstream 69404 31635763 ~ 31636329 (+)
G65270 NA non-coding downstream 91367 31657726 ~ 31659455 (+)
G65276 NA non-coding downstream 115755 31682114 ~ 31683154 (+)
G65290 NA non-coding downstream 145186 31711545 ~ 31711765 (+)
G65332 NA non-coding downstream 218458 31784817 ~ 31785133 (+)
AMCG00020715 gas8 other upstream 80363 31459502 ~ 31484470 (+)
AMCG00020708 LOC106562285 other upstream 346993 31162601 ~ 31217840 (+)
G65100 NA other upstream 793906 30767024 ~ 30770927 (+)
AMCG00020695 cdyl2,LOC106562298 other upstream 864579 30686706 ~ 30700254 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other upstream 1028269 30533193 ~ 30536564 (+)
G65343 NA other downstream 297024 31863383 ~ 31864706 (+)
AMCG00020742 NA other downstream 527665 32094024 ~ 32095186 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other downstream 620255 32186614 ~ 32189381 (+)
AMCG00020748 NA other downstream 707927 32274286 ~ 32280835 (+)
G65590 NA other downstream 1026123 32592482 ~ 32594454 (+)

Expression


Co-expression Network