G65433 (LOC106580491,LOC108439670,LOC103398109)


Basic Information

Item Value
gene id G65433
gene name LOC106580491,LOC108439670,LOC103398109
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32186614 ~ 32189381 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU81825
tccctctctcttgcgctctctctctctctcttagctTACAACTCACCATGTACAATTACAAAGGATACAAAAAGAGGAAGCGATATAAACAGACGAGAATATACCGAGCTGGTTTAtacatgctgctgctgctgccgctgctgccGAGACGCACGGGCGCCCTATACACCGAAAATAAAAACCCAACCAAGAGAACGCAAAACGCTAGGGAACTGTAGATATCTGTCTCTTTCGTCTTAAAATAGCTTTAATATACTACAACAAAGATAGAAAACTCTACACAGGAGATGGAATGGAGGTTAAAGGCATCTTAAGTCACTAGAAGTgagttgaattttttttttcgttttcaatttcttaataaGATTACCCAAGAATCCAGctaaaaaataccttttttttttgtttgtttctcaaacAGAAGTTGAAAAAAATGACAGTACCAATATTAAtatgtaggattttttttttcactttttttttatattatagaaaaaacattttctctacAATAAGTTTTCTAGTGGAAAAGAGTCAGCTCGTGTCATAAAAGGAAGCTGCCCAATCTGATcaaattcagaaacaaaataaacgacagcccaaaaaataaaaatacaatttcaaataaaaaagaaacagtaaCAAACGAGAAGAGGCGAAGTCGTCGCTGTCCAGGGTTCACTCCCCGTCACGAGTCGCAATACTGGAGCGCGGGGGCCGTGGCTGCACGGGGCCCCTGGAGCCACAGGGAGTGTCCCGAGAAGGCTGTCATCTTAGAAACGCACAAAGAAATCCCAAATTCCTTAAAACGTCCACGGCGGGACCGTGTCTGGAGTTCCCAGAGGACAGACAGCCCGGACACCCCCCCTGTCCTCGACACAGCAGCCTCTCCGGGGTGATGGAGTGATGACTGTGTTACGAATCACTGGCTCTTTAAACCGTTCTGAtactgagtgagtgtgtgtacgtgtgtgtatgtgcgtgtgtgcgtgtgtgtgtgtgtgcgtgcatgcgtgtgtaGCTTCAGATCATGTTTGCAGTTCCAGTCTGTCTCTTGGGAACACCACACACTACAGCCACCATGATTAACACaaacccccccgcccctccctGCCCTCCCATGCCCCGTCTGTCCTCCTGCCCTCGGCCCACAGCGGGTCTGAGCCCCTCACCCCCCCACAGCCTGCACCATCACGTAAGTGCCACTGCCCTGATGCGCAGGGCGAGTATAAGGATGTgagtgtgagggtgtgtgtgtgtgtgagagtgagtgagtgtgactGGATGAATGGCCTTGGACAGGACCGTTTCAACACCACGAGGAAATTAAAAACGCCCCCCAAAATAACGACACCGATACTCATACAGAAGGTCCCGGGACACGGAGAGGAGGTCAGACTGAGCCCCAGCAGCGCGACTCCGCAGGGGGCTGGGCCTTCTCTTCCCTTCCTCCTGTCTGAAGTGTTTTCTCTGTAAGGCTCTGTTTCAGTTGTGTGCctgttctcttattttttttattcttttataattttttttaaaaacaacacttttctttttgtgatttttatcaGTCCAACTCCTTTTTCTCGcctcctctccccccctcccctctctctcaggcggAGGGGTGAGAGGCTGGTCCCGTGCTGCGCTGAGCGCCCGTCTGCTCACAGGCTCTTTAAACAGAGTCTGTCCAGTCCCGCCAGGCCACAGACACACCGGCCCCCAGCGCAGGGAGGGAGGGGCCCGCGAACacgtacaaaaataaaaaccataataatattaataataatattaataaaaaaataacaaagaaaccaaaagacAACAGAGTCCCTTATGCTCCTCTCCCCCCAGGTCTCGGATGGACGGCACAGAGGAGGCCCCCCCGCGCGCTCTCCGGCGCTCATCTGCTCATGTAGGGCGACTGTTTGGGCACGCCTGCGTTCATGTAGCTGTGGTGGGAGGGGCCGGTGTACATCATGTTGGTGTGGTGGTTGGGCTGCATAGGCTGCTGGGGGTACGCCTGCCCCCCCATCATCCCCATCTGCATCTGCATGGGGTACTGGGCCGGCTGGTTCATGTAGGCGGGATTGCCGTGGTAGCCGCTGTTCATCATGGGCTGGGGCATGCGGTAGCCGGCGGGCATGGCGTTCAGGGCGTTCATGTTCATGGAGTTGTAGGGTGCCGGCGTGGGCATGAGGTTGGGCATCATGCCGCGCTGCACGGCCAGCGCCCGTGGCCCGCCCTGCATGGCCACCGCGCCCGAGCTGCGGCCGTACAGCTGCTGCTGGTGGGGGGAGCCGGAGGGCAGCGGCGCCGACTTGGAGCGGATGGAGATGTGGCCCTTGACAGTGGCCATCTGCCCCTGCAGCCGCTGGGCGTGGGGTGGCGGAGCGAGCGCCAGGTTGGCCCCCGGCATGTTGCACTGCAGCAGGTTCATGGAGCCCGAACCCAGGCTGGGTGGGGGTGTCATGGTAGGCTGGGCCTGGGGCAGGGGCGGGTGCGGCGAGGGCGCGAGCTGCGGCAGGCCTGGGGGGGCGCTGGCCAGGGGCACGCTGGTGGCGTAGGAGGTGACCGTGGCGTGGGAGTAAGCCATGCTGGCGTGCGGGTCCATGATGGTGTTGGTGAGCTGCTGCAGCTTGGCCAGGCTGAAGGTGGCCGAGGGCTGGGGGTAGCCGCCCGCGCCAAAGTCCTGGCCCATGCGTTCGTACAGGCTGcgaccccccccgcccccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81825 True 2738 TUCP 0.54 2 32186614 32189381

Neighbor

gene id symbol gene type direction distance location
AMCG00020741 NA coding upstream 67036 32110530 ~ 32119578 (+)
AMCG00020740 NA coding upstream 89300 32095411 ~ 32097314 (+)
AMCG00020738 pdcd5,LOC106587385,LOC107550119 coding upstream 115361 32061412 ~ 32071253 (+)
AMCG00020737 NA coding upstream 126796 32057395 ~ 32059818 (+)
AMCG00020736 NA coding upstream 134760 32031531 ~ 32051854 (+)
AMCG00020747 ap3m2,LOC108255511,LOC108439675,LOC103397469 coding downstream 33825 32223206 ~ 32232152 (+)
AMCG00020750 ikbkb coding downstream 64747 32254128 ~ 32263707 (+)
AMCG00020749 NA coding downstream 92200 32281581 ~ 32289339 (+)
AMCG00020754 NA coding downstream 121109 32310490 ~ 32314382 (+)
AMCG00020756 NA coding downstream 157281 32346662 ~ 32355829 (+)
G65413 NA non-coding upstream 93443 32092971 ~ 32093171 (+)
G65332 NA non-coding upstream 401481 31784817 ~ 31785133 (+)
G65290 NA non-coding upstream 474849 31711545 ~ 31711765 (+)
G65276 NA non-coding upstream 503460 31682114 ~ 31683154 (+)
G65270 NA non-coding upstream 527159 31657726 ~ 31659455 (+)
G65450 NA non-coding downstream 44769 32234150 ~ 32253861 (+)
G65452 LOC106568273,LOC106562702,LOC104948043,LOC105031130,LOC102213975 non-coding downstream 79245 32268626 ~ 32269457 (+)
G65503 NA non-coding downstream 118057 32307438 ~ 32307719 (+)
G65534 NA non-coding downstream 254500 32443881 ~ 32444644 (+)
G65579 NA non-coding downstream 374049 32563430 ~ 32585714 (+)
AMCG00020742 NA other upstream 91428 32094024 ~ 32095186 (+)
G65343 NA other upstream 321908 31863383 ~ 31864706 (+)
AMCG00020715 gas8 other upstream 702144 31459502 ~ 31484470 (+)
AMCG00020708 LOC106562285 other upstream 968774 31162601 ~ 31217840 (+)
G65100 NA other upstream 1415687 30767024 ~ 30770927 (+)
AMCG00020748 NA other downstream 84905 32274286 ~ 32280835 (+)
G65590 NA other downstream 403101 32592482 ~ 32594454 (+)
AMCG00020783 dock5,LOC106585561 other downstream 518552 32707933 ~ 32744735 (+)
G65691 NA other downstream 757350 32946731 ~ 32989445 (+)
G65705 NA other downstream 918492 33107873 ~ 33108426 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G356949 NA non-coding NC_047618.1 CM018564.1 17789534 ~ 17800487 (+)