G65549


Basic Information

Item Value
gene id G65549
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32358238 ~ 32365142 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU81960
TAAATATATGAGTCAGGATGTATGtaattaatcatgtatttattgattgtgcATTCCAAGCACACGTTACATTTCATCTCATACACagcaatgcaaaacaacagaaacacatggaCTGATCACACTCGTTTCAGAATACATCTGTGTGGAAGGAGAGCAGCAGTGTGTGCATCATTCAGTAATGCATACGACAGGGGTCCCGGCGTTACAGGGTGACTCATGCACTGGGAGGAATGTGACTTGGTTAAGTGGTTGAGGTGTGGTAGTGGGGGCTACTGTAACTACAGGGCCTCAGAGGGGAACGTGTGGACCACTTCCTGCCACACCCCCAAGCTCATGATATCCCAACTTGACTCACTGATCGATTTCAAAGTTATTCCATCAACCTTTTTAGCTTCTTCTTTTTAACTGTCTTATTCCTGTTGGGTTATGATGTGTACGTACATCACGCTGTGTGCGTTGTTCTCCTGTAGTCGCCTGTGTAGCTGTGATGGTGCTTTATACAGTAAATCTGGTACGTGTGCAGTGCAAATTCAGTGACATGCGTTTTTGTATTGGGGTTGATGATGAGTTTCAGGGTTCTGgtattaaaattacagattcctgtttattttcatgcagCATACAACCTGTGTggatgtttttagtttttttttttatccttttaaCATTGTTGTACAGATTTTCATTCCCTGAACAATAcagcccccacacacacacctctcagATTCGACAACAATCGTAATTGTATCAGTGTGAGCACTACATTCTcatcaaaaacatacaaacaaagcaaaaaaacacaaatctttaAAGTGCAACATGATCCACGTTGCATGCATGTGCTGTAGCCTGGAGGAGCTGGGGCAGGACGGggcagtgtgcatgtgtgagtgtctctgggagtgtgtgtctgtgtgcgtgcgAGTGTCTGGGGAACAGGTGTGTAACTCGGTGGTTTTTGTACTCTCACTGTGGAGGAGGACCTCAGCTTCTCCAGTTCAACAGCAAGATGCAGATTTGAGAGtgagtataaatatttataaatcagtGTATAAATAGTACAAAGCCTTTTACTTCAGCAGGATGCAGCCGCCTAGATATTCCAATCATGTTAAGCAATAACATTAATGCTAATTATAAGGATTTATATATGCGAGTATACACATACCTCGGGAACCCGTTTTATACAGCGTGTGCAGATTTATTAGGCAATTATTATTCTTCAAGATGATTTCAACCATTGGAGAGATTCAATGCCATCATTGAAGccaaaactttattttgcatcaaaactgaatgttttagaaagaaaaagtgaGATGAAGCAATTATATCACCTCAAAATGATTCTACCCACTCATTATTTAGGTTGACATGGTTTGCAGGAAAACCATGcttggaaataataaatatttagaatACCGACTTCCTAATAATTATGCACACGCTGTCAGGGCAGTGTGTTCTAACGGCTCGGGTCAAGTGTCTGAGCCCATCGTCATAGCAGCGGGAGCCTCCGTGCCTCAGGCAGCTACAGGCCGGAGACTCCAGCTGGTACAGTCAGGGCTCTCAGTGTACAGAGCACAGAGCAAAGAATGCAGCATTTGTCTcaaccctccctccccccccactgccccaccccacccaccccctccctcccataCTGCGTGGACTGTGAGAGAGGGGTGACTGGTCTGAGGCTGGACATGTCCTCCATAGCCCACCAGAGCAGCTGGAAGCCCCTCCCCCAGCAGTCAATTAGTGTCTTTATGTCTATCTGTATTCACCTCACCTGCAACACCATGCCGTGAGGAGaccaaagaaaatgtaatccgCAGactccctgtccctgtccccagTGCCCTGTATcagtccctgtccctgtcccttaTCCCAGTCAGTGCACCATCAGAGTGCTGGTCAGGAGCAGCGCAGAGGTGGTGACCAGAAGTAGCAGCCCCTGACACAGCTGTGGGGCGGCAGCGTCGTTGTTGCCCATGCGTCCGCTCTGGGGTGCGGGGTTCTTCTCCAGGTAGCGCTCAGAGTAGACCAGGTAGAGCTCCACACAGCGACGCACCTTCAACTGCTCAATCAGCTCCGGGTACCCGATCTCCATGATGCTCACAATGTCGTCGTCCTCCTCTTTCTGCCCCCCACCTGGTGCAGGGCCTGCTGGGGGGTCTTGGATCTTGCCCTGGCtggaagaggagagggagatggaggcgGCTTGGGTGTTGTTGACAGGTGACCCCTGGGCGACAtcagtgttgttgttggtgttgttgttggtgttgatGTTGGCTGGCTGGTCTCTAATGATGCTGCGGTCAGTGCCGGGGTCAGTGCCAGGGTTAGTGCCAGGGTCAGCCCCGATGTCTGCGCCAGGCTTGGGCATGGGCAGCAGGTCATCCCTCTGGACGCACTTGTCCATGTAGGTGTCATAGGTCTCAGGGGGGGTACGGTAGTGGTAGTCGCGGCCGTAGTCATTTTCATCAGTGGAGCGCGATCCGTAACGCCGCCACATGTAGCGGTTGTAATAGTGCTCCTCCTCGGGGCTGTGGAACTGGAAGTGTGGCCGGGGGAAGCGGCCCAACCCATAGCCCAGTGCCATGCCTGCCACTGCGCCCGCCCCTGCTGCCAGTGCTGCCTTCTTTCCGAAGCCCATTGAATTCTTGGACGGGCCCCCCACTGAGCGTGCGAAGGGCGACAAGCCCCCGCCCCCCATGCCATACCCCCCGAATCGTGGGCTGGGGAACTGGTTATTGGGGTACCCTCCTCCACCCCAGTTAGGATAACCGGCTGGCTGTCCGTACCCTCCCCCTGCACCTGGGTACTGATTAGGGTAACCCCCTCCTCGGCCTGGGTACTGGTTGGGGTAACCTCCTCCGGCTGGGTACTGGTTGGGGTACCCTCCTCCGGCTGGGTACTGGTTGGGGTACCCTCCTCCGGCTGGGTACTGGTTGGGGTACCCTCCTCGGCCTGGGTACTGGTTGGGGTACCCCCCTCCAGCTGGGTACTGAGGGGGGTATGCCGCTCCGCCTGGGTTCTGAGGGGGGTATGCCGCTCCACCTGGGTTCTGGTTGGGGTACCCTGCAGGGTTCACCCCTCCTCGGCCTGGGTACTGAGGGGGGTACCCCCCTCCGGCTGGGTTCTGGTTGGGGTAACCCCCTCCGGCTGGGTACTGAGGGGGGTACCCCCCTCCGGCTGGGTTCTGCTGTTTGGGGTAGCTACCGGGATTGGTGTTCCTGTTGCCTGTTCCTGTTGGTGTCTTGCCCTTGTTGGTGCTGCCGCCGGTCTTGCTTTTGCCCCAGCTCGAAATCTTGCT
>TU81961
TAAATATATGAGTCAGGATGTATGtaattaatcatgtatttattgattgtgcATTCCAAGCACACGTTACATTTCATCTCATACACagcaatgcaaaacaacagaaacacatggaCTGATCACACTCGTTTCAGAATACATCTGTGTGGAAGGAGAGCAGCAGTGTGTGCATCATTCAGTAATGCATACGACAGGGGTCCCGGCGTTACAGGGTGACTCATGCACTGGGAGGAATGTGACTTGGTTAAGTGGTTGAGGTGTGGTAGTGGGGGCTACTGTAACTACAGGGCCTCAGAGGGGAACGTGTGGACCACTTCCTGCCACACCCCCAAGCTCATGATATCCCAACTTGACTCACTGATCGATTTCAAAGTTATTCCATCAACCTTTTTAGCTTCTTCTTTTTAACTGTCTTATTCCTGTTGGGTTATGATGTGTACGTACATCACGCTGTGTGCGTTGTTCTCCTGTAGTCGCCTGTGTAGCTGTGATGGTGCTTTATACAGTAAATCTGGTACGTGTGCAGTGCAAATTCAGTGACATGCGTTTTTGTATTGGGGTTGATGATGAGTTTCAGGGTTCTGgtattaaaattacagattcctgtttattttcatgcagCATACAACCTGTGTggatgtttttagtttttttttttatccttttaaCATTGTTGTACAGATTTTCATTCCCTGAACAATAcagcccccacacacacacctctcagATTCGACAACAATCGTAATTGTATCAGTGTGAGCACTACATTCTcatcaaaaacatacaaacaaagcaaaaaaacacaaatctttaAAGTGCAACATGATCCACGTTGCATGCATGTGCTGTAGCCTGGAGGAGCTGGGGCAGGACGGggcagtgtgcatgtgtgagtgtctctgggagtgtgtgtctgtgtgcgtgcgAGTGTCTGGGGAACAGGTGTGTAACTCGGTGGTTTTTGTACTCTCACTGTGGAGGAGGACCTCAGCTTCTCCAGTTCAACAGCAAGATGCAGATTTGAGAGtgagtataaatatttataaatcagtGTATAAATAGTACAAAGCCTTTTACTTCAGCAGGATGCAGCCGCCTAGATATTCCAATCATGTTAAGCAATAACATTAATGCTAATTATAAGGATTTATATATGCGAGTATACACATACCTCGGGAACCCGTTTTATACAGCGTGTGCAGATTTATTAGGCAATTATTATTCTTCAAGATGATTTCAACCATTGGAGAGATTCAATGCCATCATTGAAGccaaaactttattttgcatcaaaactgaatgttttagaaagaaaaagtgaGATGAAGCAATTATATCACCTCAAAATGATTCTACCCACTCATTATTTAGGTTGACATGGTTTGCAGGAAAACCATGcttggaaataataaatatttagaatACCGACTTCCTAATAATTATGCACACGCTGTCAGGGCAGTGTGTTCTAACGGCTCGGGTCAAGTGTCTGAGCCCATCGTCATAGCAGCGGGAGCCTCCGTGCCTCAGGCAGCTACAGGCCGGAGACTCCAGCTGGTACAGTCAGGGCTCTCAGTGTACAGAGCACAGAGCAAAGAATGCAGCATTTGTCTcaaccctccctccccccccactgccccaccccacccaccccctccctcccataCTGCGTGGACTGTGAGAGAGGGGTGACTGGTCTGAGGCTGGACATGTCCTCCATAGCCCACCAGAGCAGCTGGAAGCCCCTCCCCCAGCAGTCAATTAGTGTCTTTATGTCTATCTGTATTCACCTCACCTGCAACACCATGCCGTGAGGAGaccaaagaaaatgtaatccgCAGactccctgtccctgtccccagTGCCCTGTATcagtccctgtccctgtcccttaTCCCAGTCAGTGCACCATCAGAGTGCTGGTCAGGAGCAGCGCAGAGGTGGTGACCAGAAGTAGCAGCCCCTGACACAGCTGTGGGGCGGCAGCGTCGTTGTTGCCCATGCGTCCGCTCTGGGGTGCGGGGTTCTTCTCCAGGTAGCGCTCAGAGTAGACCAGGTAGAGCTCCACACAGCGACGCACCTTCAACTGCTCAATCAGCTCCGGGTACCCGATCTCCATGATGCTCACAATGTCGTCGTCCTCCTCTTTCTGCCCCCCACCTGGTGCAGGGCCTGCTGGGGGGTCTTGGATCTTGCCCTGGTCACACAAAAACGCCTATCCTGCGCTCACATCTCCTGCGTGTAATTCTCCCACCGTTGAATACTAGTTTTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81960 True 3328 TUCP 0.52 2 32361235 32365142
TU81961 False 2274 lncRNA 0.47 3 32358238 32365142

Neighbor

gene id symbol gene type direction distance location
AMCG00020757 NA coding downstream 66784 32289896 ~ 32291454 (-)
AMCG00020753 NA coding downstream 88505 32267146 ~ 32269733 (-)
AMCG00020752 NA coding downstream 113760 32234154 ~ 32244478 (-)
AMCG00020751 kat6a,LOC103398109,LOC107697242 coding downstream 145745 32188550 ~ 32212493 (-)
AMCG00020743 NA coding downstream 219331 32123391 ~ 32138907 (-)
AMCG00020758 NA coding upstream 2976 32368118 ~ 32369718 (-)
AMCG00020764 NA coding upstream 8946 32374088 ~ 32378924 (-)
AMCG00020761 slc23a2,LOC107394182,LOC108440813,LOC106585070 coding upstream 19948 32385090 ~ 32396520 (-)
AMCG00020763 kcnip3a,LOC108440810 coding upstream 33293 32398435 ~ 32406525 (-)
AMCG00020760 pcna,LOC106580445,LOC106585071 coding upstream 74552 32439694 ~ 32443671 (-)
G65468 NA non-coding downstream 142481 32212727 ~ 32215757 (-)
G65465 NA non-coding downstream 170527 32186482 ~ 32187711 (-)
G65397 NA non-coding downstream 296941 32058318 ~ 32061297 (-)
G65337 NA non-coding downstream 554446 31785515 ~ 31803792 (-)
G65315 NA non-coding downstream 599738 31757451 ~ 31758500 (-)
G65571 NA non-coding upstream 150261 32515403 ~ 32515617 (-)
G65753 NA non-coding upstream 909034 33274176 ~ 33274444 (-)
G65776 NA non-coding upstream 1440559 33805701 ~ 33852626 (-)
G65783 LOC105024168,LOC106563219,LOC104947650,LOC103362088 non-coding upstream 1466593 33831735 ~ 33835514 (-)
G65813 NA non-coding upstream 1596035 33961177 ~ 33962191 (-)
AMCG00020746 NA other downstream 235305 32121885 ~ 32122933 (-)
AMCG00020713 NA other downstream 945415 31365663 ~ 31412823 (-)
AMCG00020702 NA other downstream 1549392 30800582 ~ 30808846 (-)
AMCG00020700 NA other downstream 1620262 30722783 ~ 30737976 (-)
AMCG00020694 wwox other downstream 1827102 30449745 ~ 30531136 (-)
AMCG00020767 NA other upstream 189718 32554860 ~ 32559096 (-)
AMCG00020774 snrpg other upstream 242720 32607862 ~ 32610708 (-)
G65641 NA other upstream 289992 32655134 ~ 32657019 (-)
G65679 NA other upstream 521222 32886364 ~ 32891493 (-)
G65756 NA other upstream 1003483 33368625 ~ 33369105 (-)

Expression


Co-expression Network