G65891


Basic Information

Item Value
gene id G65891
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34416595 ~ 34480123 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82380
ctgtgtgtgtgtgtgtgTAACACAACGGTGCATCTGAGATCTTGATTACATTTTGCAGTAGgactttaatattttcaaaacactgtCACCACGGCAACTTATCAGATATCTCTGTAATATTAAaggaaacctttttttatacataattaCTTCTCCCCTACTATGTGATGACATACAGCATCAAAAATTACGAAAGATTAAGGCAAGTGATAAATAAGCTGCACAGGGCTATGTAGCTGGGTGTTAAGAAACTGACAATGTCCCTGCTGTCCCCACATACggttctgttttttctgttcatatttgtttaatatgcagAAACCAGAATGCCAACAAAACCAAGtccaaaactttaaaaaaacaacaacattgtaaTAAGCACAAGGTGCCATCAACAACACTGGAAATTGAATTTAGTGCTGTGTATTTAAACCACACTGGTACACTGTGACTGTTATATTTGCACTGTCAGATGCAAAGCCCTGCTAGTTAGTAACCCTGGTAATGCCAATCCTATACAACCAGTTCCATATATTTATAGTTATGAATTGGTTTGTAGATCTGAGAGGCAACAGTTGCccacattacacattttatcaGCAAACACAGTTTCAAAGGGATTTTTGAGAGGATGTAGAAATGTCCTTTATCCACGTATGCAGTCTGTTATTTACTTCATGTCCAATTGTGTTAAACTTatattcattaattacattttattataaaggtCGTCTTATCTGGTTGGCTTAAACCGTGAacatgtatatctatattttagttgtctatattgtattaaatgcatttggttTAAATGGGGTGGTTTAATAAGGAATTActgttattcatgttttctatttaaagccttttctgttgtttttttgctcagTTTTTGTGTCCATCTTCCGCGCTGCCATTAGATTTTATAGAGAATGATAgccatattgtattttaagatataCTATGATGATATAAGAGAATGATATCCGAATAACTATGTTTTAACTGTTGTGTGTGCTTAGTGTTTATATAAGGCACCGAGTATATAGGATTTTATTGATGCACTGTCTGCAATCCCGGTCTCCCATTTGTGATTCTCAGACATTGCCGGGGGTGCAGAGCGGACCTGTTACGCCACCTTGATGTCGAGAGTGGCGATATAATGCTTTTCTCTaccattttcaacaaaacatgaCATGGGTCACGAAAAGAAACCGAACAAGTCTGGTCCTTCAGTTGACCCACCTGGATCTAAATACCTTGATTTGTGGTCGGTACCACTTTCAACCCATAGATGGAGCCAAGCGCTGGTGGTCTACCTTCAACTCAGtgcttttaacatttcataaatGTTACACTTGctgcatataaaataatttataaaatagttcaaatccatttttgttagtttttctgTGGCTGGACTGTATTCATTCACCTTGGAGAATCCCACTGAGTAGCAATGCAGGTTAAAGAAGTAAAGCAGTTGggattattcatattattactaCTAGCATAGTTAGGTCCATTCTGCACCCTGAGTTAGATATTTTGTGTCTATTTGCTCCTGCTTTAAGGTTATTTATATTggtatttttttccttgattGTTTGTTGCAATTTTAAGATTACGGATCCGTTTAGAAATTGCTACACAAGCGCTTCAATCCGTTTTCCTACTCTTAACCAGCTTCACTGCCATATCAATGTCTGCTGGGGTCCAGTGTAGAGAGAGACGTACACGTGTTGTTAGCGTGCCATTTGTAAAACAATCCATCAGTGCAAAAATGAAGTGTGTCTTGGATATCATTGATGTAGCACTTTTTTGTAAGTCCGTatcaaaaatattttggttttctaATGAAACTATAAATTAGTCCTATCTTTCCATATCTGTGCAACTAGATGATACGAATAGTGCGACATTACAATATACTGGATCTCTCTGTGCTTTGTAGTCCACAAAGATGCAATATCAAGGGCGCGCCTCTGCAAGGAAGGGACATTTTAGAGAGAATTAAACGACTTCcacaagtttattattatttttttaatcctctgAAGGAACAGTCCTGGTAGACGGGTGCCCAGAGGGTTATCTGAACCTAATGCCCGGTGTCGGGTTACCTCAAGTTTGTAATGGGAGCATCACTGAGATGGgagtacaaaaataaagagcGTCCTGGTGAAAAGCCTTAGTTATTAGGAAGGAAGGACCATGTCTTTAGACCCTACTTATcgacttgtttttctttattttctatacagAGCTCTATGATAGACTCTCTCTGTGTGGTTTCCCTAGTCCAGTGGTATGCCATGACCTTGTGTACCtggcattatttaatttgttttttgtttttgttggggtTTTTTTGGTGCAAGAAATGTTGTGTATTTGaatctgaaaacacacacacacacaaaacatgattACCCTATTTATGTACTGTGTTACAAAGTAttaaagagagaggaaaaaaaaaacacacacttctgttttcttttgagaGCCTGTTATCCTCTTCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82380 True 2528 lncRNA 0.37 2 34416595 34480123

Neighbor

gene id symbol gene type direction distance location
AMCG00020817 NA coding upstream 14471 34393701 ~ 34402124 (+)
AMCG00020814 NA coding upstream 59458 34342691 ~ 34357137 (+)
AMCG00020808 mthfd2,LOC106580352,LOC107728122 coding upstream 178315 34233825 ~ 34238280 (+)
AMCG00020809 NA coding upstream 213680 34198498 ~ 34202915 (+)
AMCG00020806 NA coding upstream 261084 34151480 ~ 34155511 (+)
AMCG00020827 NA coding downstream 1256 34481379 ~ 34493390 (+)
AMCG00020826 NA coding downstream 18163 34498286 ~ 34502202 (+)
AMCG00020835 hk2,LOC106585103 coding downstream 370539 34850662 ~ 34865362 (+)
AMCG00020840 NA coding downstream 398567 34878690 ~ 34879805 (+)
AMCG00020842 NA coding downstream 401368 34881491 ~ 34892993 (+)
G65877 NA non-coding upstream 149495 34239889 ~ 34267100 (+)
G65873 NA non-coding upstream 154666 34222346 ~ 34261929 (+)
G65831 NA non-coding upstream 354000 34062152 ~ 34062595 (+)
G65829 NA non-coding upstream 365558 34049994 ~ 34051037 (+)
G65670 NA non-coding upstream 1534477 32879099 ~ 32882118 (+)
G65954 NA non-coding downstream 32534 34512657 ~ 34512879 (+)
G65956 NA non-coding downstream 33923 34514046 ~ 34515896 (+)
G65962 NA non-coding downstream 46744 34526867 ~ 34527075 (+)
G65978 NA non-coding downstream 196788 34676911 ~ 34732379 (+)
G65994 NA non-coding downstream 266770 34746893 ~ 34748114 (+)
AMCG00020820 NA other upstream 4975 34404534 ~ 34411620 (+)
G65830 tet3,LOC106906237 other upstream 357130 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 456013 33954806 ~ 33960582 (+)
G65705 NA other upstream 1308169 33107873 ~ 33108426 (+)
G65691 NA other upstream 1427150 32946731 ~ 32989445 (+)
G66008 NA other downstream 304089 34784212 ~ 34787474 (+)
G66060 NA other downstream 487721 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 667480 35147603 ~ 35149418 (+)
G66149 NA other downstream 683690 35163813 ~ 35164985 (+)
AMCG00020874 NA other downstream 1267033 35747156 ~ 35750446 (+)

Expression


Co-expression Network