G65956


Basic Information

Item Value
gene id G65956
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34514046 ~ 34515896 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82464
GATGTtccactaaagaaagaaaaccaagggaaactgctagtaggaaagtcctgattTGTTtatacctcaatgccaggagtataaggaacaagatattagacctagaagccacagtgctggtgtgtgaaggagtaacagaaacatggcttacagaaaatgatggggatgaatacaagttgaaaggatacacacagtttaggacagacaggcaaaatcgaagaggtggtgggggaacattatatatcagaaacgacattgaggcagaagaactcaaatctgtaatgaaacagaatcattgtgggttaaacttttaaataaaagatctggaggattagtggtaggagtgtgttacagacaacccaattcagatattcagaaagatgttgcattgtacaatgtaatcaggactgcatgtagcaaggatgtggctgttataatgggggatttcaattttgcaaacatagactgggaaagcccagtttcgattgcagaagcagaaatagaaatggttgagaaggcaaattactgctttctaactcaatttgtcagggaaccaaccagagagagtgatTTGATACGGAAAGACACTAGTTACAGATCCactggcaaactgtgatcacaatatggttaactttgaggcattctttcaaaaaacaaggaccaagtcaaaaacaatggtctacaattttagaaaagcaaatcttGAAGGTATAAggcagcacaaaacaaaatacaaagaatatgttgaactgcaaagagatgttaagtgagggatcaggaaagcaaagagggaaatagaaagaaacagctcttggagctaaaattaatgcaactaagagcttttttcaatactacaacagcaagaggtcaataaaggaggaagttaaacagataaagggcaaacatggaagtatcttggaaaacgaacaagaagTGGCAAaagttctaaatgagtatttcacagaggtttttacaaaagaaaagacagataacatgccacaggttaacaatcagtccagtcaaaccctaagagagatcaggataaatgaggaggaggtactaaagggactagcagaattaaaaaccaacaaatcacctgggccagatggtatatttccaacagtacttaaagaaatgagggaaattatttattagctaactaaactattccaaaagacacttagaacaggggatgtgccaactggtcagaaaactgctaatgtcacaccaatccacaagaaaggggacaaaactgagccaggaaattacagaccaatcagtctcacctgcattacttatAACATTTTGGGAAAAATTATTAGACTGAAAatcgaggagcatcttaatcttggagatagtcagcatgggtttagatgaggcagatcatgtcttactaatctattagagttctttgaacatgcaactgcagctgtagatcatgtgaaagcatatgatatgatatacttagattttcaaaaagcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatgtaagtagatggattatgaactggttgatgtataggaaacagagggtgtcgataagaggagtcgcttctaactggagtgaggttgttagtggagttccacagggatcagtattagggcctttgctgtttctaatctatgttaatgatctggactctgcgatagttagcaaacttgtcaaatttgcagatgatagtaaaataggtggctcagcagttATAATTTccgcagcacaggctattcaaaagGACtaagataatattcagttgtgggtcgacacctggcagatgaaattcagtgtggacaaN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82464 True 1851 lncRNA 0.38 1 34514046 34515896

Neighbor

gene id symbol gene type direction distance location
AMCG00020826 NA coding upstream 11844 34498286 ~ 34502202 (+)
AMCG00020827 NA coding upstream 20656 34481379 ~ 34493390 (+)
AMCG00020819 LOC107597267,LOC107654641,LOC107741205,LOC105890027,LOC107663217 coding upstream 38401 34462466 ~ 34475645 (+)
AMCG00020824 NA coding upstream 57145 34452211 ~ 34456901 (+)
AMCG00020825 NA coding upstream 62319 34450528 ~ 34451727 (+)
AMCG00020835 hk2,LOC106585103 coding downstream 334766 34850662 ~ 34865362 (+)
AMCG00020840 NA coding downstream 362794 34878690 ~ 34879805 (+)
AMCG00020842 NA coding downstream 365595 34881491 ~ 34892993 (+)
AMCG00020844 NA coding downstream 403922 34919818 ~ 34927630 (+)
AMCG00020843 camk2b1,LOC105905148,LOC102297714 coding downstream 419119 34935015 ~ 34936792 (+)
G65954 NA non-coding upstream 1167 34512657 ~ 34512879 (+)
G65891 NA non-coding upstream 33923 34416595 ~ 34480123 (+)
G65877 NA non-coding upstream 246946 34239889 ~ 34267100 (+)
G65873 NA non-coding upstream 252117 34222346 ~ 34261929 (+)
G65831 NA non-coding upstream 451451 34062152 ~ 34062595 (+)
G65962 NA non-coding downstream 10971 34526867 ~ 34527075 (+)
G65978 NA non-coding downstream 161015 34676911 ~ 34732379 (+)
G65994 NA non-coding downstream 230997 34746893 ~ 34748114 (+)
G65996 NA non-coding downstream 233231 34749127 ~ 34749343 (+)
G65995 NA non-coding downstream 233602 34749498 ~ 34750151 (+)
AMCG00020820 NA other upstream 102426 34404534 ~ 34411620 (+)
G65830 tet3,LOC106906237 other upstream 454581 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 553464 33954806 ~ 33960582 (+)
G65705 NA other upstream 1405620 33107873 ~ 33108426 (+)
G65691 NA other upstream 1524601 32946731 ~ 32989445 (+)
G66008 NA other downstream 268316 34784212 ~ 34787474 (+)
G66060 NA other downstream 451948 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 631707 35147603 ~ 35149418 (+)
G66149 NA other downstream 647917 35163813 ~ 35164985 (+)
AMCG00020874 NA other downstream 1231260 35747156 ~ 35750446 (+)

Expression


Co-expression Network