G65978


Basic Information

Item Value
gene id G65978
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34676911 ~ 34732379 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82489
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctctgtcAAAGCATAAATGTCTGAAAAATGTCCTTAGGCACTGCCTACTCTTAGTgatcactttaaattaaaaggaacTGAAATAAGGCAATACAATGGGGTCTTGTCCAATTCTGGTATTAACTCCATCGACAACAGTGCAGACCTCTGATCCTTACaggtatttaaaacaaaccaaccaacacAAGAGTATTAGGTTTTATACAGTGAATTATTAAAGTCTAATCAAACCTAATTCTGCACTGCATAGCAATGCACTGGACACACCTGGATGAATCATATATGTGCACTACGAATGGATGCCCCAGACCAGTGTTCTACTGTGGCTTCAGACCATTttagttatatataaaatgtcgagagagaaaaaaaaaaaaaagcttttcatagttaacattttaattgcgTTTATACAGTTTCAGAACATCTGCACAGACTTACTGTTTggttatttacatacataacaGTATTGTAATAGCCctccaataaaacaaaaggaaaaaagtggaatgcaaaaaatgtaaaaatccctAATTTGTGTAAGTACAtcaaatttgtgaaaaacaaaataactagtAATAGTATTGTGCAATATTTGTCTGCCTTACATAAAAGAAAAGTGGCAGTAATCCCTGCAATTggtttagttaaaaaaaaagaaaaaaaagccaacATCCAATACTTTTCATAAAAATTTTCACAAATGCAATAGGTCCTTAAACTTGTCACATGATTATTTCTTATCCCCTCCTTAGGGTCTCTTTCCTGTATTGGACACACGGACacgcaaaaaaaacaaccatctCATGTTGACAATCCAAATGACATGAATcccaaaataatgaaaaaaaaaaacaaccccaaattaatataaaaagattGGTTTCTTTCAATTTCACTGTAGAGAGAAAAAGTCactacatgtattttgttttccttttctgtataCGTACGAAAGGCATAGTCCTTTTTTTGTTGAATCGgatactgtctgtctgtgtgaacGCGTGATCACTGCGCTTGGTATCCCGGCGAGCCAAATCCTGCCTGGTTAGCTATCACACAGCCATTCAGTCCCTGTGGGGGCTCAACCCTCATGTTAGCACCCGTCCACGCAGCGCTGGCCTGTGTTTGACTAGACAAAGGAAGAGAAAATACCAACGTAAGGAGGACGTCAAGGAGGAACTGGGAACGAACATAGCGGCCAGTCAATTAAACCTTTTCCAGCTTCTCGATTACGAGGATTTTTAAGGATTTCTGTTCTACAACCAGTTTGTGGACACCACCTTTCAACAAGtggcagagaagaaaaataaaatgagggaACTAAAACACGCTGCAGGCATGACTTAAATTCTTCCTAAAAGGGCTTACTTGATCTGCACTGAGATTACTTGGCTAGGGAGGCCAGAATGGCTGGGGTATTACAAAAGAGGCCTGACATTACATGGGAGTAGGGAATCGCTTACTTAAAAATCACTGGACAAGcagtgtgtggggtggggggcacaGGGGTGGACCACAATACATTCAGGCtccacacaacacaccacaagAGACTGGCGCATGAAGAATACAATTTACTCGATCACAGCCCATGCTGTGAAACTCATTTAGTCGAGGTTTCACAAATGCCAGTTCCTCCTACTGAGCATCAGATCCCTTTTGTgccatttaaatcaaatcaaaatctgCAGCAGGACCCCTCCAGTTCGCAGTTTGAGccaatgtgcattttatttttgccccCAGTAGTTGTAATGCAACCTGTGCCAATTCTGCAGGTAGTACCCCAGTTCATTGCGttccaatatattttaatatctccGCTCCAGGTcaattgtaaaaaataagtataaatacattcattaggGAATTTTATTTGCAGTTGTATAAAGTAAAGCTACTGGAATATGCAGTCAAGTCCATAAGCAGCTAAGGAGGAAGCGAAGCGTCCAAGAAATACCAAATCTCACACACTTGTCCTGGGCTTGGTTTCACAGTCATTCACTGAAGTCAAACCAAACCAGGGTCTCCCAACCATGGCTGCACAGCTTGGCCTGGAAGGTGGGGTTGACCGGACCAGTGAGGCAATCCTCAAACCTACAGACCGTTCTAGGACTTCACTGAACAAGCGCGATGGCAGAGATCCATTCGGGTTTCTCATCTTCTAAAGATTTATACAAATTGGTCCCACACGTGTAGTCTAAAAGCTTTAAAACtttatagtttaaaatgttaaaaaataaaaatcaggacTGGTGATGCAAAACTCCTGTCCTACACTGGTCTGATAGGTGTGCGTCACCCACACTGATCGCAGGATTAGCTTGGCATCAGAACTAGCTGTGCTGCCTCAGTCAAAATAGTGTAAGAAAACCAAACAATCCTGCCCCCAATTGAAAAAGACTGCAATACttaaaatgatttcaaacaTGGTGGAAATAAGTTTGtggcattaaaaatgtaaagaataaaagTCATATGTACACGAGTTTAATTTCACCACAAAACTCATGGAGACATCACAGGCAGAGACTTTGACAAGCACTGGGTCAGAAAGCACAGTGTGCAGAGCACTGCCCTAACTAATGAGGACCAAGACTACCCCTTCCCCCATGCAAAACACCTCACAATTACCATCAACAGATTCCATGCAATGTAACACTTCCACACAGCTGTTAGGCAAAAAAACCAAACACTGGGCGTAAAAGGGGGAAAGGTTGTGTTCAAGGTGCTGCTACAGAGTTACAAATCTCCAGGGTTtgcaagataaaataaaactaaacctaAAAATAACTTTCTCCTTAGTCTATCCAGCCAAGAAGCAGATCTTCTGGGGTGGGGGTGTTCTTTTACACTGTTGCCTTGATGCTCCTGCAGCCCAATTTTTTACCGACACAGCCAGGTATGCAGTAACATTACCCGTTTATGCAAACCAACATGTGTCCTCCCCGTTTTGAGTGGCTGCTATGGCCCCTGGTTTGTCTGCACGAGAAGGcacgtggggggggggggggggggggggaagctgCTCCTGTCAGGGAACTCATTCCCTGTCGTCCCTTGCCTCCAGCCTACCCTGAAGATTCACACAATTTGCAGTACCATACCAACACCCCCCCAGTCCTGAACCACAAGCACCCTGCCAGGCGAGACCCACAACCCTATAAGTGGCAATGCTGACTAGGTTGGCACAAATAAGACGCAGTAGAGTATGAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82489 True 3274 lncRNA 0.41 2 34676911 34732379

Neighbor

gene id symbol gene type direction distance location
AMCG00020826 NA coding upstream 174709 34498286 ~ 34502202 (+)
AMCG00020827 NA coding upstream 183521 34481379 ~ 34493390 (+)
AMCG00020819 LOC107597267,LOC107654641,LOC107741205,LOC105890027,LOC107663217 coding upstream 201266 34462466 ~ 34475645 (+)
AMCG00020824 NA coding upstream 220010 34452211 ~ 34456901 (+)
AMCG00020825 NA coding upstream 225184 34450528 ~ 34451727 (+)
AMCG00020835 hk2,LOC106585103 coding downstream 118283 34850662 ~ 34865362 (+)
AMCG00020840 NA coding downstream 146311 34878690 ~ 34879805 (+)
AMCG00020842 NA coding downstream 149112 34881491 ~ 34892993 (+)
AMCG00020844 NA coding downstream 187439 34919818 ~ 34927630 (+)
AMCG00020843 camk2b1,LOC105905148,LOC102297714 coding downstream 202636 34935015 ~ 34936792 (+)
G65962 NA non-coding upstream 149836 34526867 ~ 34527075 (+)
G65956 NA non-coding upstream 161015 34514046 ~ 34515896 (+)
G65954 NA non-coding upstream 164032 34512657 ~ 34512879 (+)
G65891 NA non-coding upstream 196788 34416595 ~ 34480123 (+)
G65877 NA non-coding upstream 409811 34239889 ~ 34267100 (+)
G65994 NA non-coding downstream 14514 34746893 ~ 34748114 (+)
G65996 NA non-coding downstream 16748 34749127 ~ 34749343 (+)
G65995 NA non-coding downstream 17119 34749498 ~ 34750151 (+)
G66072 NA non-coding downstream 292624 35025003 ~ 35026229 (+)
G66151 NA non-coding downstream 434689 35167068 ~ 35170275 (+)
AMCG00020820 NA other upstream 265291 34404534 ~ 34411620 (+)
G65830 tet3,LOC106906237 other upstream 617446 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 716329 33954806 ~ 33960582 (+)
G65705 NA other upstream 1568485 33107873 ~ 33108426 (+)
G65691 NA other upstream 1687466 32946731 ~ 32989445 (+)
G66008 NA other downstream 51833 34784212 ~ 34787474 (+)
G66060 NA other downstream 235465 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 415224 35147603 ~ 35149418 (+)
G66149 NA other downstream 431434 35163813 ~ 35164985 (+)
AMCG00020874 NA other downstream 1014777 35747156 ~ 35750446 (+)

Expression


Co-expression Network