AMCG00021085


Basic Information

Item Value
gene id AMCG00021085
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2522860 ~ 2576954 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021085
ATGCTGCTCGAGATCCCCGAAGATTCAAACCAGATGTGCCCCGCGTCCCTCAGCGGTTACTCCCTGGCCGTGCAGAAGTTCTCCCAGACCCTGCAGTGCTTCCAGTTTGACTTCATCGGAGACTCTCTGACTGACGACGAGATGAATATTGCCGAGTCTTTCCGTGAGTTTGCTGGTCTGCTGCAGGAGGTGGAAGATGAACGGATGATGCTGGTGCAAAACGCCTGCGACTTGCTGATCAAGCCTTTGGAAAAATTCCGCAAGGAGCAAATCGGAGTCACAAAGACATTACAGAACGGGTCTGACCAGTTTGCTGCCGCGgagaggaagaagaagtTTGAGAAGGAAAGTGAGAAATACTACTCACAACTGGAGAAACATTTAAACTTGTCATCGAAGAAAAAGGAGTCCCAACTTCAAGATGCAGATGGACAGCTTGACAAGGAGAGGCTCAACTTCTACGAGTCGTCGGTGGAGTATGTGTATCAGATTCAGCAGGTGCAGGACAGGAAGAAGTTCGACGTTGTGGAGCCGGTGCTGGCCTTCCTTCACAGCTTATTTACCTTGAATAACCTCACGTTCGAAATGACTCAGGACTTCATGCCCTACAAACAAGAACTGCAGCTGAGCTTGCAAAACCTGAACATCGTCAACGTTTCTGTCTTCCAGACCAGGAACCACTTTGAGAGCACCAGGGAAGAGATGGAGGAGCTCATGAAGAGGATGAAGGACTCGCACCAGCTGTGCAAAATCTCCAACCAGTCGACCATCGAAGGGTATCTCTATTGCCAGGAGAAATGGGCTCTGGGAGTTTCTTGGGTGAAGTACTACTGCAGATATCAAATAGACAGCAAGGTGTTGATCATGATCCCCGTGGAGCAGAAACCCGCCGCCAAGCAGGGCATCACAGAGTTAAAACTCAAATCCTGTATCCGGCGGAAGTCAGAATCTATAGACAAGAGGTTCTGTTTTGATATTGAATGCCAAGAAAGACTGGGGACTGTGACCCTGCAGGCTCCGTCAGAGTCCAACAGGAAGATGTGGATGGAGGCCATGGACGGCAAGGAACCTGTAATGGAGTTGAATGAAGTCGGGTTCAAGTTCGTCCGGAAGTGCATCAATTACGTTGAGACTAAAGGACTCACACAAGAAGGTGTTTACCGAACTGTGGGCAGTAACATTCAAGTGCAAAAGCTTTTAAATGCCTTCTTTGATCCCAAATGTCCAGGTGATGTGGATTTCCTTAGCAGCGACTGGGACATAAAAACGATCACCAGTTCAATGAAATTCTACCTCAGACTGGGTGCCATTCATTCACTGGTCTACAAACTCCCGGAGAAGAACCGCGAGATGCTGAACCTGCTGATCCGACACCTAGTCAACGTCTGCAGCCACAGCGCGGACAACCTGATGACTCCCTCCAACATGGGCGTGATCTTCGGGCCGACGCTGATGAGGGCGGAGGAGGATACGGTGGCCGCGATGCTCAACATCAAGTTCCAGAACATCGTGGTGGAGATTCTCATCGAGGACTGTCAGAAGATCTTCAGCGCCGCCCCCGAGGAAACCAACGCCCCTCCGATCCCCCCGCCCCGAGTGAACCCGAGGAAACGTCAGCCGATCACCATCTCCAAacgccccccccgcccccggcCGATGCTCAACAACTGCCAGTTTGAAAGCGCTGACGACGACTACAGCAGCAGCGCTCAAAATGGCAGCAAGTCCGATGCTATTTCAGATGGCAGTTCCTCAGCCAGCCCGGTTCCCCTCCAGCGGACCAAATTAGCCAACTGCGCCCCCCGGATCAGCGCCAGGGAGCCGGGGCAGAAACAGGCCCTCATGCCCCAGCAGTCCACCCGGCCTGAGAGGCACTCAGACTCAGACGTGGGCAAACTGGTGGCCAGGCTTCATGATGGTGGGCAGAAAGCAGACAACCCGGGAGCCAATGGAGAGACTGGCGTCGGCGTGACCAGAGCCCTCTCGTTCCCGAACCGGAAACCAGCCCCGCGCACCCCAGCTTCTGCTAGAGAGGGGGATGGAGACAATGTGGGCAAAGTGAGATCGCCGATGGAGAAGCCTGTGATCACCAGGCCCCCCATGCGGCCCCCGGACCCCCCGGTCAGGTTCCCGGCACCCCTGAAACCCCCCGTGCCCCCAGTGGCCGAGGAAAGCACCGCGTCCTACGTCGCTTCCAAAGCCAAGTTTTTCGAGAACGCCTCGAGGCAAACCGGAAGAGCCGAGTTGGAACCCAAACCAGACGACACTGGGAACGCCAGTGCCAGGGTTGAGGTGGACCTTCATGTGATCCTGAGGAGAAGCGCTCAACCTGCCGAGCTCATCTCCGGCACCGTCGAGTCTCAGTGCGAGAGAAGAGCCTTCAAAGTGACGACCCTcagacaggtttccatctcctcACATTCCCTGGACTGGAGCTGAGGACAATCCTTCTTTGAGAGGCACTAGGATATGGGTCAGGCTTGGGATCAACGGACGCGAATCACACCCTGAATGTGTCGCCCAATGTCGAGCTGACGTGATGCTAAAAGGAaaagggacttttttttttcatatttttggtTGTACATGTTTGCGTTCAAATCATTTAATCTGTGATGCTGAACATGCCTTATTGTCTTCTCATGGATTCCAGTGGATCCAGTTGGGTCTACCAATGAATGTGCCAGAGAAACCTTAATATGCTATTGGTGTGTTTTCAAGCCAAGGTGCCGTCTGAGCAGAAAGTGTTGTGTATAGGCCATGACTTTTTGGGGTCATTTGGGGTGTTTCAGGTGGCATTTTCTCAAATCACTGGTTTTCTGGATGAACTCCTCTGAGGTAgcactttttcccccactacAGTAAATAATTTAACTAACGCAATGGTATCAAATTTTGAGattttacagttgtttttaaactgtaggCTTCTGTTCACCGCATTTGGTTTGAAACAGATTTGATGGCAAACAGAATTAAAGAGAGTTTGCCTTCATCCACCTTCAGATTAACATGTTGCTTCTTGGACACAACTGACACAACGACACATGAAGACTTCTTTAAAGTCCCTCTACGAAGTTACCTGATATGGGTGGAAATTATAATGCACAACTATATTCTGCACATTGACTAAATGcttagaattaaaataaactgtaaatgtgaGTTTTGGTTGCGGACACTTTTGAAAACCAAAAGGCACAGAAAAGCATCAGTTACAAACTGAGCAGGGCGTTCAGGATTTAAGATTTCGAAGATTCATTTTCATAGCTCTTCTCTTTCCCTAAAATCAGTGCAATCCATCTTTTTGAAAACtgactgtttttgttcttgtttttctcttaagTAACTTGTCTTTATCTGTATACATTTACTGTCTGCAGTTATTGTCCCTCTCACTGGATTTGCCACTgttacatatacaattatattattattattattatgattatcattcTGTGGACTTTCAATATTTCTTCCTAAGTCAACAATGAGAATATTGAATGTGAACAAACTCAACCAATTCCCTGAcgttcaaataaatgtttctttctgtgAGAACTACTTCATCTGTAGCCGAAGAAAGAAAAATTGCATTTGAGTTGAACTAGAGGTAAAcggtttatttatatttttgtatatatatatatatatatatatatatataaaaaacagtgACATTGCCATGAAtcccagatattttatttagatgtaAAGCCAATTTCAACTCCATTGGGTCTCTTCTGCACACACAGTGTCTGCAGTGCAGTCTGGCTGTCTGTGTTGCTGTCCTGCACTCGATTCCTCTTCCCACTCGGCACAAACATGCTTAGAGCTAAATTGATTTTCTGGGAACATCGTTCCCCTTCATCTCCTGGACCAGATATCTTTTCTGATTGTCTTAATTAGTGTTTTTCCAACTTCGTTCTGTGCTGTTATTGAATTTTGTCTCTCTGAAATGACGGACTGCATTTCCAATGTACCTAACCAAAAAGAAAGTAagcattttctttataaaaataaaataaaaccacctgTTTTTCCTAATATGATATATAAGCAGGATCACATGAACGAACGTACTGGGAAGGCGCTGATAACAATGTCATTGCAGGATAACGACGGAATCACCAACAGTGAAAACACTTGCTTAGCCCTTTCCATCTAATTCGGCTGTAATCTGTAGGTAACAACGTAATCTCTGGGTAATTACAAAGATTTAATCGCATAGTTATGCATCAAATCACGCTTTGAATTCCACAGAGCAGCTCCGCTCAGTTTCAATCCGAAAGAAGAAAAGATCCTTCCCCCTCGCTGCCCTTCTTGGcttcctctctctcaattcGTAATAAAGATAGGATGCAACTCTTCTCCGAGGACCAGGAGATTAATCGTAAACCAATAAAAAGATATCTATAGTCATTGGAATAGTCTGGAATGGTATTATTTCATTACCGATTATAAAGGCTTGTcacaaattattacaaataactgCAGCTGGCAATAAAGCAATCCTTAAACAACCAAAGcattaaacaaatctgtatttttaatgttttactcgGGAGGACATAAAGCATTTCTAGACTGTGCCGTAATGCTTCACCGGCAGCCATTTTCCCAGCCGAAATGTGCGACTAGCAGGGAAACGAACGGCTGGAGCAGAAAGCACAACTTCTGTGCCGAACAGGTGACCGGAAAGGTGGCTGGGGAGTAATGCCCCTGTAAGAGCTGTCCAATTATGCTTTTTAATGATCAACAAGCATATGAATGTGAAATACGCTGGAGAAGAGGGCAGGGAGCAGAACGGTCACTGACACGAGAAAATGACAGCGGTTTTGATGCGTGTCCTTCGAGTTGATCGTCCTTCAGGTGCGTGTCTCCCCTCGTATTACACCCGACCCAAAGGAAAGGTGCCATGGAAACCTTTTCATGCTTTAAGCGGTGACATTTACAGCTTCTCCCGTCTGGCAAATTAATTTGaagtttgggggggggggggggggggggcgcaaTATAAAGTTAAAATTACTTTAGATTAAATGAATCCCAGAGGATCAGAGATGATAATTAAAGCTTGTACATTGTTATTAAAGAAAtgctttagttttttccttcacCAAGTTTcagaatttcacatttcaaagcagttATTGTGATTTAAAGCTCTCTGTGTTGTGTACATATTCTCCCaacttttcttttgtattatttttgtatttttacgtGGGGGGCTTTCGCCTGTAAAGCCTGCGATCTGAGAAACTGGAAGACCTTTTCAGGGTCCTGCCGATCAAACGTCTGCATGCTTTGTGTGATCTTTCCTCCATAGAGAATCCTCTCGCTCGAGTCTGCAGTCTGGTGTACCTTTGTAAAATCTGTCTGTTGACACATGAATGTTTGTGGAATTGTGTGTAGATGTACTGAACAGTCTAGTGTTCATTTGGAAGTATTAAAAAcgcctttctctctc

Function

GO: NA

KEGG:

id description
K20650 OPHN1, ARHGAP41; oligophrenin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021085 True 5473 mRNA 0.46 25 2522860 2576954

Neighbor

gene id symbol gene type direction distance location
AMCG00021082 NA coding downstream 110526 2402174 ~ 2412334 (-)
AMCG00021077 NA coding downstream 277169 2230508 ~ 2245691 (-)
AMCG00021078 NA coding downstream 346326 2157649 ~ 2176534 (-)
AMCG00021075 NA coding downstream 415974 2086626 ~ 2106886 (-)
AMCG00021072 zc4h2,LOC107557113,LOC107597258,LOC107663226,LOC107672730 coding downstream 465475 2049196 ~ 2057385 (-)
AMCG00021086 NA coding upstream 6376 2583330 ~ 2583617 (-)
AMCG00021091 LOC106603306 coding upstream 678425 3255379 ~ 3265211 (-)
AMCG00021092 efnb1,LOC106603306,LOC106567780 coding upstream 711040 3287994 ~ 3288740 (-)
AMCG00021105 NA coding upstream 1156802 3733756 ~ 3736353 (-)
AMCG00021110 NA coding upstream 1202867 3779821 ~ 3801007 (-)
G83442 NA non-coding downstream 5734 2515490 ~ 2517126 (-)
G83441 NA non-coding downstream 11311 2511324 ~ 2511549 (-)
G83422 NA non-coding downstream 168166 2353987 ~ 2354694 (-)
G83371 NA non-coding downstream 331951 2190626 ~ 2190909 (-)
G83355 NA non-coding downstream 375743 2144404 ~ 2147117 (-)
G83465 NA non-coding upstream 23555 2600509 ~ 2602840 (-)
G83481 NA non-coding upstream 113016 2689970 ~ 2690210 (-)
G83499 NA non-coding upstream 364629 2941583 ~ 2954613 (-)
G83512 NA non-coding upstream 459343 3036297 ~ 3056152 (-)
G83517 NA non-coding upstream 510740 3087694 ~ 3087955 (-)
G83428 NA other downstream 63481 2457001 ~ 2459379 (-)
G83313 NA other downstream 544892 1973160 ~ 1977968 (-)
AMCG00021090 NA other upstream 100631 2677585 ~ 2718919 (-)
G83761 NA other upstream 2126301 4703255 ~ 4751235 (-)
G83864 NA other upstream 3967538 6544492 ~ 6546577 (-)
AMCG00021153 NA other upstream 4538466 7115420 ~ 7122491 (-)
AMCG00021249 NA other upstream 9516523 12093477 ~ 12100854 (-)

Expression


Co-expression Network