AMCG00021092 (efnb1,LOC106603306,LOC106567780)


Basic Information

Item Value
gene id AMCG00021092
gene name efnb1,LOC106603306,LOC106567780
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3287994 ~ 3288740 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021092
ATGCCTCCAAAGTTTCAGAGTGGGAAGGGCTTGGTGATTTACCCCGAGATCGGAGACAAGCTGGACATTATTTGCCCTCGGGCCGAAGTCGGCCGGCCCTACGAATACTACAAGCTGTACCTGGTGAAGAGGGACCAGGCCGAGTCCTGCAGCACCGTCATGGACCCCAATGTGCTGGTGAACTGTAATAAGCCCGAGCAGGACATCAAGTTCACCATCAAGTTCCAGGAGTTCAGTCCCAACTACATGGGCTTGGAGTTCAAACGGAATATAAACTATTACATCACATGTAAGTCCCTTTATATTCACTCTGTCGTGGGCCGAGAGCGAGAGCAGAGCCGCTCGACCAGTCATGGGAGGCTGACCCGAGCGGGGCTGACCCGATGTCTCACTCGGAGGCCTGGCGGCTGTTTCATCCTCAGTGTTTTCACTTCAGGGTTTAGTTGCGAGTCCGTGAAAGACCAGCGGAGATTGAGATACAACACACAGGTAGAGATTCTGCCCTGGTTTTCTACACAAAGAACCTCCCAGAGACGGGGTCCGAACAGCTga

Function

symbol description
efnb1 Predicted to enable ephrin receptor binding activity. Acts upstream of or within embryonic liver development and optic vesicle morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including alar plate midbrain region; central nervous system; hepatoblast; intestinal rod; and liver and biliary system. Human ortholog(s) of this gene implicated in craniofrontonasal syndrome and dysostosis. Orthologous to human EFNB1 (ephrin B1).

NR:

description
PREDICTED: ephrin-B1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021092 True 552 mRNA 0.53 2 3287994 3288740

Neighbor

gene id symbol gene type direction distance location
AMCG00021091 LOC106603306 coding downstream 22783 3255379 ~ 3265211 (-)
AMCG00021086 NA coding downstream 704377 2583330 ~ 2583617 (-)
AMCG00021085 NA coding downstream 711040 2522860 ~ 2576954 (-)
AMCG00021082 NA coding downstream 875660 2402174 ~ 2412334 (-)
AMCG00021077 NA coding downstream 1042303 2230508 ~ 2245691 (-)
AMCG00021105 NA coding upstream 445016 3733756 ~ 3736353 (-)
AMCG00021110 NA coding upstream 491081 3779821 ~ 3801007 (-)
AMCG00021111 NA coding upstream 521671 3810411 ~ 3813043 (-)
AMCG00021109 NA coding upstream 527953 3816693 ~ 3825283 (-)
AMCG00021115 LOC106567772,LOC106603301 coding upstream 948297 4237037 ~ 4260026 (-)
G83517 NA non-coding downstream 200039 3087694 ~ 3087955 (-)
G83512 NA non-coding downstream 231842 3036297 ~ 3056152 (-)
G83499 NA non-coding downstream 333381 2941583 ~ 2954613 (-)
G83481 NA non-coding downstream 597784 2689970 ~ 2690210 (-)
G83465 NA non-coding downstream 685154 2600509 ~ 2602840 (-)
G83539 NA non-coding upstream 133462 3422202 ~ 3422446 (-)
G83596 NA non-coding upstream 421413 3710153 ~ 3718190 (-)
G83602 NA non-coding upstream 445937 3734677 ~ 3735207 (-)
G83607 NA non-coding upstream 458418 3747158 ~ 3747512 (-)
G83608 NA non-coding upstream 459918 3748658 ~ 3750902 (-)
AMCG00021090 NA other downstream 569075 2677585 ~ 2718919 (-)
G83428 NA other downstream 828615 2457001 ~ 2459379 (-)
G83313 NA other downstream 1310026 1973160 ~ 1977968 (-)
G83761 NA other upstream 1414515 4703255 ~ 4751235 (-)
G83864 NA other upstream 3255752 6544492 ~ 6546577 (-)
AMCG00021153 NA other upstream 3826680 7115420 ~ 7122491 (-)
AMCG00021249 NA other upstream 8804737 12093477 ~ 12100854 (-)
G84814 NA other upstream 9238353 12527093 ~ 12527694 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031233 efnb1 coding NC_007116.7 CM002889.2 36271016 ~ 36328688 (-)