usp37 (usp37,LOC107670323,LOC107549772)


Basic Information

Item Value
gene id usp37
gene name usp37,LOC107670323,LOC107549772
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5128137 ~ 5138150 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248553.1
TTGCGAAGCCGCGTAATGTTTTGGATCGTTCTGTTTACGTTTATAACgttatttaaacatacatttaattcaatattgCGAACGCAAGTGAAAACGCCGTCAGCGTTCACGGAAGAAACCCGGGAGCGCCCACCGTCGGCCCCGGTGAAATCTCGCGCAATCTCGCGCGAGTGCGAGCGCCTCTTCTCACCTCCCATTTCCGCTCTAAATTTTCACATTCCCGCCATCATCGGCTGCTCGTGGGACGCGAGCGCAGATAACATCATAGCCGGCAAAACTCACACACTGACAGCGCGCCACATTGAGCGGATACCTTCATTCTCCAGCGCTTTCTTTAAGGAATTTCCCTCTCGCAGGTCTCCGGTCGCGTCCGCTCGCCCTCGATCGTGTCCAGAGCCGGAGTTCGGAGCGCCTCTCGCCCTCATGGCCGTCGCAGTGCCCAAGCTGACCAGCGGCGGCGCTGTCCGCATCCGCATCAGGTGTGGAGAGCTGGGGACCACCAAGTGGAAAGAGGGGGTCTTTGAAATCCACGAGAGAGACAACAAAATCAACCTGCTAGTCAAGTTCAACAGCGGCGGAAGTTCGAGGGTGTTTCAGctGAATCACAATGTTAAGCAGGTGTCATGGTATCAAATGCACGGCCCAAACCGCATGACTTTGACTCTGAAAGACTCGAGCGTGGTCATGATGGACAAACTGTCCTTGTTGGTTGCTAAAAAAATGAAGGAATACCTCGAAATGGTGAGGCTTGGGAAACCAGCAGTTTTAAAGACAAACCAGGGGAGTGCTAGCTTTGGCTTAGTTCTTGGGAATCGCGCAGCACAGAATGACTCTGGCCTTTCTCCGTCAGAAAAGCAGAGCACTCCAAGACGTCCAAGTCTGGACAGCAGAGAGGACAACACGCCGAGAAAGCCTCTTGGGAGTCCCAGCCGGGTGTCTTCCACACCTGGCCGCAATGGGCTCTCTGAGAACAGGAGCGAGAAGAGGAAGAGGCTGATGAACTCTGATGGTGATATGACCGAGGACTACCCCAAAGAGAACGACTCTTCTAGCAACAATAAAGCCATCACGGATTCATCCCGAAAGTTTTTGCTCAGCTGCAAAGAGAAACTAAAGCAGTCAGAGGAGCACAGAGCAACCGCTCCACACACGCCTGCCCCTCTCCAGCCAACATCCTTTTATGGGAGCAGAACAGGAACTAAAGATTACTCACAGACTCATTCATATTTGGACAGGCCCAGCAGTACAGGCCAGTGTCCCTCCGCTAAAAGAAGCCTAATGTTACCCAATCACTCAACTCCCTTTAAAAAGGTGCGCCCAAAtttggactacggtggctggaACAAACCAAGACCGTCTGCGCTGACTCAGCCGCAGCCTCCACTGCAAGGATTCTCCAACCTTGGGAACACCTGTTATATGAACGCCATACTCCAGTCACTTTTCAGCCTGCCCTCATTTTCAAACGACCTGTTAAAGCAGGGCATACCATGGAAGAGGGTCCCCGGCAATGCCCTTCTGAGGCGTTTCGCTCTTCTGCTGGCCAGGAAAGATATTTCCCCTCCAGAAGTGAAGAAAGATCTTCTGCGGCGAGTGAAGAACGCTATTTCTTCAACGGCTGAGCGTTTTTCTGGTTACATGCAGAATGATGCCCATGAGTTCCTGAGCCAGTGTCTGGACCAGCTGAAGGAGGATGTAGAGAAGATCAACAAAAGCTGGAAGAATGAGCCCTCGGGCTGGGAGGAGCCACAGAGCGCTCGGATAGCAGAGGAGGTGGACACCTCACGCATTTACACCTGCCCAGTGACCGTCAACATGGAGTTCGAAGTGCAGCACACCATAACGTGTAAAAGCTGTGGAGAGGTGGTGACGAAGCGAGAGCAGTTCAATGACCTGTCCATCGACCTGCCGCGcaggaaaaaaacacttcctCTGAGATCCATACAAGACTCTCTAGATCTCTTTTTCAGGATGGAGGAGATTGAGTATTCCTGTGAAAAGTGCAGTGGGAAAGCAGCTACCGTCTCTCACAAATTTAGCAGGCTTCCCAGAGTGCTGATACTTCATCTTAAACGCTACAGCTACAACAGTCAGCTGTCTTTAAACAGCAAGCTGGGCCAACAAGTCCTGATCCCCAAATATCTCACGCTGCTCTCACACTGCATAGACGCCACACGCCCCCCTCTCAGCCTCGGCTGGAGCGCGCAGAACGCCATCTCCAGGACGCTGAAGATGTCGCAGTCGGTCAACTCTTCAACGCTACGAAAAGGTTCTCAAAAGCCAGAGAGTTCGGGCGGCATGTTGTGTGACTCGGATAGTGAGGAGGAGCTCGTCAGAAAAATCGGTCGCAAACATCATTCAGAAGATGACAGGACGGAAGAGGTGCAACACAATGCACAGGTCGAGCACTCAGAGTTCAATGCCATCAACGATGAAGAGATGCTAGCAGCTGTGCTGGAGATGAGTCGGCACGACACTAGTTTGTCCGGATGCCCCGATGACGAGCCGACCAGCAGCCCAGACACGGGGTTTGGAGATGCAGACGGGCAGGACCTGACTCATCATTTGGAGCTTCTGGATGGAGAGAAGCAGCCTGCAGatgccctggagtctctaGATCTGACCATGGATGAGAATAAGGAGAACCAGACGCCTGAAGGTGTGCAGGGAGAGCTGGATTGGGTGCAGCAGTACAGTTTAGACCAGGAGCGAGAGGAACAGGAGCTGCAGCAGGCCCTCGCTCAGAGCCTACAGGAACATGAGGCGAGAGAGATGAGGGAGGATGACGATCTGAAGAGAGCCACTGAGCTCAGTCTGCAAGAGTTTAATAACTCTTTGCCGGAGCTGCTGTGCTCTGACGATGACTCTGGGAATGAAGATGGTCTGGATATGGAGTACAGTGAGGCCGAAGCCGAGGAGCTCAAGAAGAACGCAGAGACTGGAGAGCTCCTGAACTCCTTCAGACTCATCAGTGTGGTCAGTCACATCGGCAGCAGCTCATCGTCAGGGCATTACATTAGTGATGTTTACGACATGAAGAAACAGTCGTGGCTCACATACAATGATCTGGACGTCTCCCGCACGCAGGAGTCCACAGTTCAGAGAGATCGTGACCGGAGCGGATACATCTTTTTCTACATGCACAAAGATGTGTTTGAGGAGCTGTCTGAGCTGGAGAAGGCAGGAGGGAACGGTGATGCCGGTCGTACGGTGCTGCAGCCGCTATAAACGCTCTCGCACGCTTTCAACATCCCATCTAGGTGGATCCTTCTGCTGATGAACAGCTGAACTGAGCCAGGGGTAAACACGCCCTTCATCAGTACTACTGAAGaccgtccacacacacacacacctacttTGGGCACTTTTCCTTTTCTATTTCTCTTTCACTTTTCCCATTTCTCCCTGTGAAATACTGTTACCGTTTCAAATGTAGACTCGCAGTTAGATGGCTAAATGTTCTAGAACCTCCTAGGTACAAATGTTTATGGGGAaacgcaaagaaaataaatatatataaatatagaaagcaTTTTGAGTTTCTCAACAGGTGTAACTTTGACCTCGAAGTTgctcttttattttccttttttttttttttttcttctcttgtttaaatattttgtttgcctTTATAAAAGTACCCTCTGGTGAACTTAAGCATTAagagcatttttttcccctttccccTCTGCaaattttagatttgtttttcaatCTATTGCATATGAAAATTTATTCTTGTATATGTTTGGGTGGATTAGGGAATACGGGGTGTCTGTCTTGTTTGATATGCAGCTGAAAATGTGGTGCAATATTTGCTTTCGCCAGTTGGCTTTTATATGATCTATAGCGATGAAGAGAGACTTGGAATAGTACTGATTTATATTCAAGGCTTTACTGATGACTGTTGGTTGTTTTATTCCTCTTTTATAAACGTTAACCTAACAAGCTCAGTGGTATTGAtgtagcttgtttttttttttttttttttttttaagatctcACT

Function

symbol description
usp37 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP37 (ubiquitin specific peptidase 37).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 37

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0035871 protein K11-linked deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11850 USP26_29_37; ubiquitin carboxyl-terminal hydrolase 26/29/37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248553.1 True 4009 mRNA 0.49 24 5128137 5138150

Neighbor

gene id symbol gene type direction distance location
en1a LOC107670337,LOC107720935 coding upstream 19747 5105850 ~ 5108390 (+)
marco NA coding upstream 28761 5094242 ~ 5099376 (+)
c1ql2 c1ql2,LOC107670317,LOC107689526,LOC107549752,LOC107752616,LOC104939125 coding upstream 58812 5066823 ~ 5069325 (+)
LOC122351173 LOC107670300,LOC107720934,LOC107576887,LOC107549889 coding upstream 68508 5058563 ~ 5059629 (+)
LOC122351196 sctr,LOC107549745,LOC107747236,LOC107752604,LOC107670318,LOC107560812,LOC107689516 coding upstream 121341 4992313 ~ 5006796 (+)
LOC122351829 LOC107670324,LOC107577992,LOC107578707 coding downstream 4258 5142408 ~ 5148171 (+)
cd58 NA coding downstream 231453 5369603 ~ 5376786 (+)
igsf3l LOC107730347,LOC107670329,LOC107721263,LOC107549899 coding downstream 239101 5377251 ~ 5386269 (+)
si:dkey-11f4.14 NA coding downstream 248322 5386472 ~ 5391186 (+)
c9h3orf38 LOC107549925,LOC107730394,LOC107664011,LOC107728235,LOC107676993,LOC107549751 coding downstream 385410 5523560 ~ 5527595 (+)
G67888 NA non-coding upstream 26473 5101359 ~ 5101664 (+)
G67882 NA non-coding upstream 43836 5084043 ~ 5084301 (+)
LOC122351367 NA non-coding upstream 75989 5050450 ~ 5052148 (+)
G67872 NA non-coding upstream 102775 5022240 ~ 5025362 (+)
G67867 LOC107752614,LOC107689494,LOC107747239,LOC107670320,LOC107560813 non-coding upstream 116700 5006890 ~ 5011437 (+)
G67955 NA non-coding downstream 158505 5296655 ~ 5297005 (+)
G67961 LOC107689507,LOC107670332,LOC107752589,LOC107549740,LOC107549921,LOC107730419 non-coding downstream 168868 5307018 ~ 5313560 (+)
G67970 NA non-coding downstream 200819 5338969 ~ 5341289 (+)
G67979 NA non-coding downstream 235259 5373409 ~ 5392379 (+)
G68013 NA non-coding downstream 329391 5467541 ~ 5562170 (+)
LOC122351471 NA other upstream 99498 5025563 ~ 5028639 (+)
c9h2orf76 zgc:101851,cunh2orf76,LOC107670315,LOC107747242,LOC107560816,LOC107752580,LOC107549781,LOC107689495 other upstream 109799 5015470 ~ 5018338 (+)
rbm45 rbm45,LOC107716918,LOC107752596 other upstream 410904 4709053 ~ 4717233 (+)
G67717 LOC107716922,LOC107657385,LOC107725823,LOC107671308 other upstream 565535 4523286 ~ 4562602 (+)
hoxd4a hoxd4a,hoxd4,LOC107600706,LOC107671320 other upstream 714977 4409895 ~ 4413160 (+)
ndufb3 ndufb3,LOC107752587,LOC107549774,LOC107549916,LOC107689503,LOC107720946 other downstream 1995 5140145 ~ 5142152 (+)
trnar-ccu_4 NA other downstream 267079 5405229 ~ 5405301 (+)
trnar-ccu_5 NA other downstream 267753 5405903 ~ 5405975 (+)
trnar-ccu_6 NA other downstream 269326 5407476 ~ 5407548 (+)
trnar-ccu_7 NA other downstream 270099 5408249 ~ 5408321 (+)

Expression


Co-expression Network