rnaseh2b (rnaseh2b,LOC107663845,LOC107555203,LOC107720151,LOC107655484,LOC107706085,LOC107600411)


Basic Information

Item Value
gene id rnaseh2b
gene name rnaseh2b,LOC107663845,LOC107555203,LOC107720151,LOC107655484,LOC107706085,LOC107600411
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10416256 ~ 10419386 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249377.1
TAAAACATGACTTCGGGTTTCACACCCTCTTTGTACTGTACACAAACATTTGCCGCCATTTTTCTGCAGGCAGAAACTCTCAACAGGTCTTGTGTTCTCACGTTATTATCACCAGACTACAGGTCGATGCGCTATTAAATCAGCCCTTAAAATGACTACTAAAAAGAAACGCTCTGTGCACACCGACAACGACAGTTGGGTTGTCATTGCTCCAGATTCAGCACTGGACACGGGCAGGTCTGAAGAGGGAGACCCATCCTTCATCAAACTAAAGAATCCTGCTACAGGCGGTTCTTCACTGTACATGTTCGGCTGTGGCGATGTCTCTGTTTATGAAGTAAAAGCCTTTTCTGAAGACTTTCGCTCTTGGTTTATTGGACAGACGGTACAAAGAGATGGCAGGCTGCTGTATGTGACCCCCATCGATCCTTTATTCCTGCTGTTGCCATACATTAGCAGTACTGCCACTGAGGGAAAGTTCCAGCCGGCGAAGCAGATGATTATGGATGAGGATTACCCCGGATGCACTAGACTTCTGCGTTGCAAACAGGGACTGGATTGCCTTCATCATGTGGCTGATGAGAAAGaggtgGGCGATTTAAAGGTCCACAGATATAACCAGGAGAAGACCTTGGAGTGGCTCAAGAAAAAggTCCAGCGCACGATAATAACACTCAAAAAGAGCGACGTATCTGTGGGTGGAGGAGTGAAATCCAGCATGTATGTCCGAGTGAAACATGAAGATGCTACCGAAgAGGACTACTTGCGTTATGCACATGGCCTCATATCGGAGTACATCAGTGAAGACTTGAGCAAAGCCCTCCTGAAGCATCTGCAATTGCCAGAGATATCCAGCCCTAAAGAGACGGAGCCACCTTCTAAGAAACGGAAACTGTCAGATAAACCGGTAGAGGCTGGGGAAGACTACACCAAGTTCAACAGTGCGGATTTTGCACGAAAACCACCGAAGAAGATGACTGCAGCTCAGAAGAGCCTCGCCAAGGTAGACAAAACTGGAATGAAGAGCTTGTCGGCATTCTTCAGCCCCAAAGTCAAACAAGAGAAGAACTGAGGGTTTAAGGGTCAAAACATTTTGCTAATAAAGTTATTAGAAAATAACA
>XM_043249378.1
ACTTCTTATACGTGCTTAACCAAACGTGAAGTAGCATCAGAATAAAACATGACTTCGGGTTTCACACCCTCTTTGTACTGTACACAAACATTTGCCGCCATTTTTCTGCAGGCAGAAACTCTCAACAGGTCTTGTGTTCTCACGTTATTATCACCAGACTACAGGTCGATGCGCTATTAAATCAGCCCTTAAAATGACTACTAAAAAGAAACGCTCTGTGCACACCGACAACGACAGTTGGGTTGTCATTGCTCCAGATTCAGCACTGGACACGGGCAGGTCTGAAGAGGGAGACCCATCCTTCATCAAACTAAAGAATCCTGCTACAGGCGGTTCTTCACTGTACATGTTCGGCTGTGGCGATGTCTCTGTTTATGAAGTAAAAGCCTTTTCTGAAGACTTTCGCTCTTGGTTTATTGGACAGACGGTACAAAGAGATGGCAGGCTGCTGTATGTGACCCCCATCGATCCTTTATTCCTGCTGTTGCCATACATTAGCAGTACTGCCACTGAGGGAAAGTTCCAGCCGGCGAAGCAGATGATTATGGATGAGGATTACCCCGGATGCACTAGACTTCTGCGTTGCAAACAGGGACTGGATTGCCTTCATCATGTGGCTGATGAGAAAGaggtgGGCGATTTAAAGGTCCACAGATATAACCAGGAGAAGACCTTGGAGTGGCTCAAGAAAAAggTCCAGCGCACGATAATAACACTCAAAAAGAGCGACGTATCTGTGGGTGGAGGAGTGAAATCCAGCATGTATGTCCGAGTGAAACATGAAGATGCTACCGAAgAGGACTACTTGCGTTATGCACATGGCCTCATATCGGAGTACATCAGTGAAGACTTGAGCAAAGCCCTCCTGAAGCATCTGCAATTGCCAGAGATATCCAGCCCTAAAGAGACGGAGCCACCTTCTAAGCCACCGAAGAAGATGACTGCAGCTCAGAAGAGCCTCGCCAAGGTAGACAAAACTGGAATGAAGAGCTTGTCGGCATTCTTCAGCCCCAAAGTCAAACAAGAGAAGAACTGAGGGTTTAAGGGTCAAAACATTTTGCTAATAAAGTTATTAGAAAATAACA

Function

symbol description
rnaseh2b Predicted to be involved in RNA catabolic process and ribonucleotide metabolic process. Predicted to be located in nucleus. Predicted to be part of ribonuclease H2 complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and ventral mesenchyme. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2B (ribonuclease H2 subunit B).

NR:

description
ribonuclease H2 subunit B isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K10744 RNASEH2B; ribonuclease H2 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249377.1 True 1121 mRNA 0.46 11 10416256 10419344
XM_043249378.1 False 1085 mRNA 0.46 10 10416256 10419386

Neighbor

gene id symbol gene type direction distance location
LOC122351326 LOC107706086,LOC107555206,LOC107663846,LOC107720148,LOC107655485,LOC107600435 coding downstream 4742 10408759 ~ 10411514 (-)
cmss1 cmss1 coding downstream 126741 10285026 ~ 10289515 (-)
tmem30c tmem30c,LOC107655489,LOC107706099,LOC107720155,LOC107555223,LOC107600433,LOC107663858 coding downstream 131634 10278858 ~ 10284622 (-)
col8a1a col8a1a,col8a1,LOC107720134,LOC108432575,LOC107748221 coding downstream 168764 10239297 ~ 10247492 (-)
jagn1a jagn1a,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC107600432,LOC107663862,LOC108432576 coding downstream 178292 10236298 ~ 10237964 (-)
LOC122351939 LOC107720137 coding upstream 27594 10446980 ~ 10462522 (-)
LOC122351938 LOC107720137,LOC107655483 coding upstream 27997 10447383 ~ 10454136 (-)
mcf2lb LOC107663886,LOC107555216,LOC107720127,LOC107655510,LOC569231 coding upstream 43609 10462995 ~ 10479085 (-)
rnf17 rnf17 coding upstream 68311 10487697 ~ 10504466 (-)
uggt2 uggt2,LOC107600415,LOC107720140,LOC107663813,LOC107655477,LOC108430493,LOC108266228 coding upstream 112267 10531653 ~ 10558579 (-)
LOC122351639 NA non-coding downstream 152809 10253933 ~ 10263447 (-)
G69157 NA non-coding downstream 174044 10117793 ~ 10242212 (-)
G69168 NA non-coding downstream 277497 10136649 ~ 10138759 (-)
G69136 LOC107555234,LOC107655498,LOC107748211,LOC107663925,LOC107720146,LOC107600385 non-coding downstream 306013 10108975 ~ 10110243 (-)
G69147 NA non-coding downstream 329234 10085433 ~ 10087022 (-)
G69223 NA non-coding upstream 6841 10426227 ~ 10426465 (-)
G69228 NA non-coding upstream 24907 10444293 ~ 10444641 (-)
G69231 NA non-coding upstream 25891 10445277 ~ 10446767 (-)
G69346 NA non-coding upstream 418126 10837512 ~ 10844040 (-)
LOC122352018 NA non-coding upstream 430437 10849823 ~ 10908594 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 506078 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2321409 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 2391584 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 3262302 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 4155187 6246900 ~ 6261069 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 14121 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 95886 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 260772 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 977280 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 1077561 11496947 ~ 11500495 (-)

Expression


Co-expression Network