LOC122351639


Basic Information

Item Value
gene id LOC122351639
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10253933 ~ 10263447 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251782.1
TCGAGGAGGCCTATATCTGCAGTCAGCGTGCTGTTAGTTTCTCTGTTTAAGTGCAGCAGCCTAAGCTGACGCTGGACAGCACATGAACTCGCTACATATTTGGGAAAGCAGCGGGGGCAGCGCGTTGCGTCATCACGTTCTTCTGTTGCTCCAGCTGTAGCGCAGCAACAATTCCTTGGGATAGCTCAATGGAGAACCAGAGTCCTTCAGCCAAGGCCGTTATCTTTTATCTCACGACAAGGTCTTTCTCTGCACGTCTACGGTCTCTATGTCACAGACTCCACCTGGTGGTGCAGGACTCCTCGTCGTcttgttaaatgattaaaagaaCACGACCGCCACAGCGTGGAAACACGAGTCAACATGCAGAATTGATGGAGAAATGtcagaatgaaaaatgaaaaactgaagaTCTGCTCAGAAAATGGGACATACTTTCTAAAACAAGCGAGCATGGATTCCCACTGTAAACGCAGACCACTGAGGACACATGTCTTCCTTGCTTCCATCAACCCCACCTCGCATATATACGCCTATAGACGCACATCCCTTCATCCCAATAAACAGTATGCCTATTTAACCTCAAGgGTAGCCATCCGCATCATGTTATTGGACCAGTTGGACCATTCTGTCTGATTTCCTACTTTCTGCAGTAAATATTAAGgGACCGTAAGGGACAGTTGACTCAAAAGCCTTTTCATGGACAGATGTGGGCTATTCCTTATTATTTCTGCATCAATTAAGCAAGTAAAAgatctggagaaaaaaaacaatgtatgtgtatgtgtatgatcGGAAGGTTCACGAACACGGTAAAGAAAAACCCtttcatccagacatccagccaaGTGAAGAACCCTCTCCAGGAGGTAGACGTGTCACTGTCAAAGTCTACAATCAAGAGAAAACGTCACCAGAGCAAATACAGAGGGTTCACCACAAGTTGCAGGGCCTTGATTAGACTTAGTCAAAAACAGCCAGATGACaatgatagaaagaaaaaagtatggaGAATTATGGAAAAGGTCTCATGAACAGCTCATGATCCAAATCATACAACATCATCTGTAAAACATTGGGTAGTGAAATATGCATAGCTTCTAGTGACACTGGGTTACtgctgtttaattaataatgtgaCATAGAGACATAAGATGTAAACAGCTTGAATTCTGAAGTGTACGGTCATATTCTCTATGAACAGATtcaaactattatttataattacatttatttgaccacTTTTGAACAGTTCTGATTCCtaagcatattattttatatttcagccCCTTGATTTAAAGCCTAAAGTCTGCGTTTCAGTCAcatattgtttgatttatttcaaatctatTGTAATGGTGTATTAAGGCAATAGTACAAAAACTCAGTCAGTGTTTCCGGATCCGACGgtatatgcatttctttgttttgtctaaTATAACCTTTCAttcattgccttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251782.1 True 1460 lncRNA 0.41 6 10253933 10263447

Neighbor

gene id symbol gene type direction distance location
col8a1a col8a1a,col8a1,LOC107720134,LOC108432575,LOC107748221 coding downstream 6441 10239297 ~ 10247492 (-)
jagn1a jagn1a,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC107600432,LOC107663862,LOC108432576 coding downstream 15969 10236298 ~ 10237964 (-)
tfg tfg,LOC107655517,LOC107720125,LOC107748203 coding downstream 18262 10226387 ~ 10235671 (-)
rpgra LOC107555232,LOC107663889 coding downstream 93927 10149875 ~ 10160006 (-)
srpx srpx,LOC107748210,LOC107663918,LOC107555235 coding downstream 104692 10140293 ~ 10149241 (-)
tmem30c tmem30c,LOC107655489,LOC107706099,LOC107720155,LOC107555223,LOC107600433,LOC107663858 coding upstream 15411 10278858 ~ 10284622 (-)
cmss1 cmss1 coding upstream 21579 10285026 ~ 10289515 (-)
LOC122351326 LOC107706086,LOC107555206,LOC107663846,LOC107720148,LOC107655485,LOC107600435 coding upstream 145312 10408759 ~ 10411514 (-)
rnaseh2b rnaseh2b,LOC107663845,LOC107555203,LOC107720151,LOC107655484,LOC107706085,LOC107600411 coding upstream 152809 10416256 ~ 10419386 (-)
LOC122351939 LOC107720137 coding upstream 183533 10446980 ~ 10462522 (-)
G69157 NA non-coding downstream 11721 10117793 ~ 10242212 (-)
G69168 NA non-coding downstream 115174 10136649 ~ 10138759 (-)
G69136 LOC107555234,LOC107655498,LOC107748211,LOC107663925,LOC107720146,LOC107600385 non-coding downstream 143690 10108975 ~ 10110243 (-)
G69147 NA non-coding downstream 166911 10085433 ~ 10087022 (-)
G69018 NA non-coding downstream 308131 9913086 ~ 9945802 (-)
G69223 NA non-coding upstream 162780 10426227 ~ 10426465 (-)
G69228 NA non-coding upstream 180846 10444293 ~ 10444641 (-)
G69231 NA non-coding upstream 181830 10445277 ~ 10446767 (-)
G69346 NA non-coding upstream 574065 10837512 ~ 10844040 (-)
LOC122352018 NA non-coding upstream 586376 10849823 ~ 10908594 (-)
LOC122351483 LOC107663814,LOC107733620,LOC107555196,LOC107720141,LOC107600416,LOC107655476 other downstream 343755 9908188 ~ 9910178 (-)
als2a als2a,LOC107688763,LOC107596546,LOC107668398,LOC107752891,LOC107592992,LOC107738114 other downstream 2159086 8076468 ~ 8094847 (-)
LOC122351623 raph1,LOC107592998,LOC107668371,LOC107752894,LOC107738113,LOC107688760,LOC107738116,LOC107596536 other downstream 2229261 8014449 ~ 8024672 (-)
LOC122351350 cb064,LOC107688735,LOC107716767,LOC107676512,LOC108232354,LOC103042106,LOC105927538 other downstream 3099979 7070985 ~ 7153954 (-)
G68188 irs2b,LOC107715923,LOC107688717,LOC107559513,LOC107557930,LOC107721603,LOC107702923 other downstream 3992864 6246900 ~ 6261069 (-)
trim13 trim13,LOC107720128,LOC107555217,LOC107663864,LOC107706093,LOC107600394,LOC107655513 other upstream 170060 10433507 ~ 10443619 (-)
fdx1 fdx1,LOC107663820,LOC107706088,LOC107720152,LOC107655504,LOC107600437,LOC107555213,LOC107655505 other upstream 251825 10515272 ~ 10519457 (-)
mrasa LOC107551943,LOC107663912,LOC107733654,LOC107600440,LOC107738526 other upstream 416711 10680158 ~ 10686627 (-)
LOC122351858 slc10a2,LOC107663831,LOC107567642,LOC107675341,LOC107738529 other upstream 1133219 11396666 ~ 11493120 (-)
LOC122351308 si:rp71-84d19.3,gtpbp8,LOC107663822,LOC107567641,LOC107738531,LOC107733632,LOC107598183 other upstream 1233500 11496947 ~ 11500495 (-)

Expression


Co-expression Network