G885


Basic Information

Item Value
gene id G885
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4510794 ~ 4511385 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU1285
GTTCACACAAGTGTCCTGGTAGAGTAACCATAGTTGTAGTTCATGTCATGTCAATAAATTTACTTCCACAAAGCAGTGTTTTAGTTGTTTaagcaaaaatgctttttgttaaatgttatcTTAAATATGcctgtgttattttaaaaagaattcatGGCACTTATATAGTGCAATGCAATTTAATGACATTAAGACAATTCTAAAGTGCCCATTTTGGGGGGTTGTATATTTCACTAAAAGCTGAATGTAATAAAAGTTTATCAAGTCTAAATTCTGACAGCTGGTAGGCCATTATTTTCATCAGAGTTtgattgtgcattttaatgaaaaacaatagTTTGTGTTACTATCACGGGAAAAGACAATGCCCTTTAGCATGTGCTGTTATAGTGTGCGTGGGTTGTGTTAGTTTCCTGTGATGAGATGATGAGGTTTAGCAGATCCAGACAACATCAACATTAAAGCGTTTTTTATTGCTTGCTTGATTTGTTGAGCCTCTAACataatatttagtcattttagccAAGACGAAATTTCTTGTGGAAGTATGGAAATaacagaagacaaaataagtgtgagccacaaaaattaa

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

RNA

RNA id representative length rna type GC content exon number start site end site
TU1285 True 592 lncRNA 0.40 1 4510794 4511385

Neighbor

gene id symbol gene type direction distance location
LOC122353624 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 coding downstream 809549 3695165 ~ 3701245 (-)
cep97 NA coding downstream 1771205 2732846 ~ 2739589 (-)
nfkbiz LOC107751657,LOC107575617 coding downstream 1778436 2726297 ~ 2732358 (-)
eed eed,LOC107751659,LOC107662672 coding downstream 1786874 2720655 ~ 2723920 (-)
hikeshi hikeshi,zgc:110091,LOC106574699 coding downstream 1790651 2717987 ~ 2720143 (-)
ndfip2 ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896 coding upstream 20404 4531789 ~ 4546466 (-)
mnx2b mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047 coding upstream 58449 4569834 ~ 4574420 (-)
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding upstream 85695 4597080 ~ 4618627 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding upstream 162304 4673689 ~ 4739460 (-)
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding upstream 253914 4765299 ~ 4896900 (-)
G883 NA non-coding downstream 4235 4506278 ~ 4506559 (-)
G880 NA non-coding downstream 10006 4500557 ~ 4500788 (-)
LOC122346152 NA non-coding downstream 56614 4446059 ~ 4454180 (-)
G803 NA non-coding downstream 472824 4037738 ~ 4037970 (-)
G797 NA non-coding downstream 482686 4026105 ~ 4028108 (-)
G888 tuba8l2,LOC107750365,LOC107556293 non-coding upstream 40184 4551569 ~ 4553272 (-)
G889 LOC107750071,LOC107750290,LOC107674016,LOC107676064 non-coding upstream 44984 4556369 ~ 4557498 (-)
LOC122346147 NA non-coding upstream 107861 4619246 ~ 4623921 (-)
G899 NA non-coding upstream 108955 4620340 ~ 4620866 (-)
G959 NA non-coding upstream 236105 4747490 ~ 4748885 (-)
G820 NA other downstream 211601 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 496507 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 1226008 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 1821330 2688765 ~ 2689464 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 2905810 1592069 ~ 1604984 (-)
mdh1b mdh1b other upstream 444734 4956119 ~ 4960210 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 1332759 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 1600078 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 1709219 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 1756278 6267663 ~ 6274751 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G405352 NA non-coding CI01000299 null 2633389 ~ 2633733 (+)
rainbow trout (Oncorhynchus mykiss) G410747 NA non-coding NC_048569.1 CM023223.2 49978651 ~ 49978862 (-)