G973 (abcb6a,abcb6,LOC107750068,LOC107556273)


Basic Information

Item Value
gene id G973
gene name abcb6a,abcb6,LOC107750068,LOC107556273
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4929364 ~ 4930701 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU1402
TGTGTGCCACTACGATGGTGGTTCTGTTGGCGCAGACTTTAGCCAGCGAGGCCTGGATGTTTCGCTCGGTCTGTGTGTCTAGAGCAGACGTGGCCTGTGGGTAGAGTAGAGTCTTTTACGGTTTTCGCtgcttgcttgttttctgtttctgttcagTATAGCTGAGAAGTTCGCTTTTACTGAAATGTCATTAGTCTTAAATCAGTCGACACATACTAATCTCGTATGTTCTGACAGACCATTTTGTTGCATTGCACTGCTGTTTAATAAACGTTTGGAGTCAAGGTTCTCTGTCGTACCTCGTCGAGGAGGATGATCTGTGGCGCTTTGAGGATGGTGCGAGCGATGGCGACTCTCTGCTTCTCTCCTCCGCTCAACTTTAGCCCCCTCTCACCCACCTGAGTGTCATGGATGTCAGCAGCGATGGCAGCCTCCTCTACCTCCTGGTCAGAAGCAGTAACTCGACCGTAGCGGATGTTCTGTCGAATATCGTCATTAAACAGGACGGTATCTTGAGGTACGACACCAATGTGGGCGCGCAGAGAAGACTGCTTCAC

Function

symbol description
abcb6a Predicted to enable ABC-type heme transporter activity and heme binding activity. Acts upstream of or within iris morphogenesis and melanocyte proliferation. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).
abcb6 Enables several functions, including ABC-type heme transporter activity; ATP binding activity; and heme binding activity. Involved in several processes, including cellular detoxification of cadmium ion; melanosome assembly; and porphyrin-containing compound metabolic process. Located in several cellular components, including Golgi apparatus; bounding membrane of organelle; and extracellular exosome. Is integral component of mitochondrial outer membrane. Implicated in dyschromatosis universalis hereditaria.

NR:

description
uncharacterized protein LOC111608185

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1402 True 557 lncRNA 0.44 2 4929364 4930701

Neighbor

gene id symbol gene type direction distance location
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding downstream 32464 4765299 ~ 4896900 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding downstream 189904 4673689 ~ 4739460 (-)
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding downstream 310737 4597080 ~ 4618627 (-)
mnx2b mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047 coding downstream 354944 4569834 ~ 4574420 (-)
ndfip2 ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896 coding downstream 382898 4531789 ~ 4546466 (-)
klf7a klf7a,LOC107725403,LOC107752450,LOC107676060,LOC107674020,LOC107556267 coding upstream 108023 5038724 ~ 5075611 (-)
mxa mxa,LOC107725377,LOC107565622,LOC107702551 coding upstream 681207 5611908 ~ 5616115 (-)
LOC122342384 NA coding upstream 695009 5625710 ~ 5629067 (-)
efnb2b efnb2b,LOC107725384,LOC107701778,LOC107590693,LOC107702517,LOC107705455,LOC107565280 coding upstream 715445 5646146 ~ 5655085 (-)
arglu1b NA coding upstream 725936 5656637 ~ 5661762 (-)
LOC122346181 NA non-coding downstream 66399 4861001 ~ 4862965 (-)
G959 NA non-coding downstream 180479 4747490 ~ 4748885 (-)
LOC122346147 NA non-coding downstream 305443 4619246 ~ 4623921 (-)
G899 NA non-coding downstream 308498 4620340 ~ 4620866 (-)
G889 LOC107750071,LOC107750290,LOC107674016,LOC107676064 non-coding downstream 371866 4556369 ~ 4557498 (-)
G978 NA non-coding upstream 5019 4935720 ~ 4937688 (-)
LOC122346132 NA non-coding upstream 214641 5145342 ~ 5146126 (-)
G1028 NA non-coding upstream 219792 5150493 ~ 5151842 (-)
G1114 NA non-coding upstream 624789 5555490 ~ 5555750 (-)
G1115 NA non-coding upstream 626179 5556880 ~ 5557342 (-)
G820 NA other downstream 630171 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 915077 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 1644578 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 2239900 2688765 ~ 2689464 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 3324380 1592069 ~ 1604984 (-)
mdh1b mdh1b other upstream 25418 4956119 ~ 4960210 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 913443 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 1180762 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 1289903 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 1336962 6267663 ~ 6274751 (-)

Expression


Co-expression Network