G978


Basic Information

Item Value
gene id G978
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4935720 ~ 4937688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU1411
AGTCAAGACTGagattaatatgtttttattcttttcattgctgcagctgtatgtttttattatttctatacaaaatgtacaaaatttggagaaaaaaaaaaagactttggaAGCCATTAACAAATAATGGTGGATATGTAAGAGCTCACTAAATCAGGTATTAAAGGGTGCTTTTTTTGCCAAATGTCTTAATAACATTTGCTGAATTACATTATGTTTAAAGAACATACAACAAAGCCAAAACTAATCTCAAAGTCAagcaatgaaaacaaatctgCAATAATTTACTACTTGAGGATATGAAAATATTGAGGGTTATTTTTTACAAACTAAAGCAATCCGCGATGAACGCTTTGTGGACAAGGTATGGCATAAACTATCTGACCATTACAATCTAACCGACACTGTAAAAACGATCCCTTTCTGTTTTTATCCTACCCTTCCTTCCTGAAGCAACGAGAACCAAACCAGGCTTAAACTCAAACTGCTTCCCAACCTGAAAATAAAAGGCTTTCACAGGAAGgaacttcaaaacaaaacagtcctCCTCGGGACATTGGCGTGTTGCGCAAAACCATGCGAACTATTCAAAACGAGAACACGCGCTTCCGTGAGTAACAGCAGAGCCTTTTGTTAACCGCCTGCCATTGTTTTTGCTTGGATGCTTTAGAGGTTTCACGTAACATCTAAAAATCAGCCAAAGTAACCCATCCGGAAagcgaaagaaaaaaagaaagcctgGATCGTTCGTACTGCGTTAGCGCACTGCATcacacatcaaaaaaaaaaaaaaaaaaaaaaaagtcaaactgtTAATCAGCATTCTGTAATAAGCCTCCTTACAAACTTCTCCCCAACATGCTGATATCCCACCACAACCCGGTTATAACCCAGACATTTGGCTGGTTCGTAAACAACACTAAAGAAAACCGAGAGAACGGACTGCGTACGTAAACTTTGCTGGTTGCGTTTTAgttgaatgcatttacattttactgacTCGTCTAGCCGGGCATGAGAAGAGACGGTGATTTTCCTAGCGGCAACGTCGTCTCCGGGCAACATCTTCGCAACGGCGGCATGGAGCTAAAATGGGGGTCTGAGTATATCAGGCTTTCACCAAACGGAGCGAACTCAAGCCAAAGTGCCGCGAGACGAGCGCGCCACGGAGAGGAAAGAGGCGCCGAGTCATTGCGAGCTATTGCGCACTGAGGGACACCGTCCATGTGACCGCGACAGATCACTTCGGACGCCAAACAGTCTTGTGGCTGGATGTCGGACGAGGCCTGCGAGTAGGAGAGAGCGGAGACGACGGAGCCCCAGAGGCAAAGCACCATATCCTGGTAGGATGAAGAGGTAGAACCCCGCTGATCTGGCCTCGAGCTGTCGTTGGTCAGGACGCAGCAGTGGAGGCTTGAGGTCGGCCGCGGCGGGAGAAGAAGTGCTGGTGACTCGATGGAGGCGTGCTTCATCGGGTCCGAGTGAGTGCGGCTGGTATTGGGAAGACGGCCGAGCTGGTGGATGACGGTGGAGGAAGCGATGAGACCGGCTACGCTAGTCAAGTACAGGAGACCCAGTATACAGgtcctgctttaaataaaaccgACCAAATCACCGGAGGAGTTTGGAATAATGACTCGTTGGagttgttgaacaaataaggtaattaaagtgtttttcatAACTGATATTAAGGGaattttaaaccaaaataaaactgaatatcGCAACATGGCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1411 True 1740 lncRNA 0.53 2 4935720 4937688

Neighbor

gene id symbol gene type direction distance location
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding downstream 38820 4765299 ~ 4896900 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding downstream 196260 4673689 ~ 4739460 (-)
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding downstream 317093 4597080 ~ 4618627 (-)
mnx2b mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047 coding downstream 361300 4569834 ~ 4574420 (-)
ndfip2 ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896 coding downstream 389254 4531789 ~ 4546466 (-)
klf7a klf7a,LOC107725403,LOC107752450,LOC107676060,LOC107674020,LOC107556267 coding upstream 101036 5038724 ~ 5075611 (-)
mxa mxa,LOC107725377,LOC107565622,LOC107702551 coding upstream 674220 5611908 ~ 5616115 (-)
LOC122342384 NA coding upstream 688022 5625710 ~ 5629067 (-)
efnb2b efnb2b,LOC107725384,LOC107701778,LOC107590693,LOC107702517,LOC107705455,LOC107565280 coding upstream 708458 5646146 ~ 5655085 (-)
arglu1b NA coding upstream 718949 5656637 ~ 5661762 (-)
G973 abcb6a,abcb6,LOC107750068,LOC107556273 non-coding downstream 5019 4929364 ~ 4930701 (-)
LOC122346181 NA non-coding downstream 72755 4861001 ~ 4862965 (-)
G959 NA non-coding downstream 186835 4747490 ~ 4748885 (-)
LOC122346147 NA non-coding downstream 311799 4619246 ~ 4623921 (-)
G899 NA non-coding downstream 314854 4620340 ~ 4620866 (-)
LOC122346132 NA non-coding upstream 207654 5145342 ~ 5146126 (-)
G1028 NA non-coding upstream 212805 5150493 ~ 5151842 (-)
G1114 NA non-coding upstream 617802 5555490 ~ 5555750 (-)
G1115 NA non-coding upstream 619192 5556880 ~ 5557342 (-)
G1116 LOC107565289,LOC107701616,LOC107705456,LOC107590690,LOC107702505 non-coding upstream 622930 5560618 ~ 5560855 (-)
G820 NA other downstream 636527 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 921433 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 1650934 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 2246256 2688765 ~ 2689464 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 3330736 1592069 ~ 1604984 (-)
mdh1b mdh1b other upstream 18431 4956119 ~ 4960210 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 906456 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 1173775 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 1282916 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 1329975 6267663 ~ 6274751 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G406872 NA non-coding CI01000299 null 3174373 ~ 3175921 (-)