G1117


Basic Information

Item Value
gene id G1117
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5579526 ~ 5607918 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU1622
gtttgctagtgcatgctttaaaatattcacttttGACTTTAATGGtgcattattaaatgctaataattaacataaaacaaagaaaaatacaggttttacaatgtaatttgttttattgcttccTGGCAATTAATGTTAGCCCACGGaagcttattgtaaagtgtgCAACCATTAAAGATGACAGAAAGTCGCCTGAGGTTTATATTAAGGCTTTTAAGTGGGGACCTTACTACACATGCAACAGATTCTTTATATTGATATCCAGCTGTATTCATTTATGAACATATTGATGTGTTGCTGTACGTTCCCTTATACAACTTACCAGCATATACAGCTCCATACATACTCCATCCAGCGTTGGTATCACGCATATAAACGCATCAgcgtttttatgtttatttttgaccTGCAAATGTATTATTGGGACCTGCAAATGATGTTTCTCATGATTTTCTCACATCTAGCGTATTATCAGTTTTAGCATGCAAAAGAACAACCCCGTGTACTTTTGGAAAAAAGTTTATTGTGAAATGACTGTGTGAAAATCGGGATGGGGGAAATCGGCAGCCTGGCCACAGCAATGTCATGTGCCTTTAACACACAGCTAGAGGTGCTGTTGTAACCCTGGATGGGTGGAGTAAGAAGAAACCAACCCTCACTTCATGAGTGGCCTTTTCCTTCTTCCCCGGTCTCCATCCCGCTGTGGACGGGCGCCCCGGGCGGAACAAGAAGGCAAGGAGGGTCAACTGCATGAAAGGACAATGtaacttccaaaaaaaaaaaaaaaaatgggcaagaaaacaaataaaggggaaaaaactgaATGGTTTAGAAGTGACATCCCATAGTCCTTTTTATTGATTGGTCTTCAAAACAGAATGGATGTCCTGACACCATGGGGTCTGCAGATATAGTTCAGCCTTCTTCACCACTCTCTCAGCGGATGGACTCTTACACGGACATGATGTGCTTGACGAAAGCTtcaatttgttc
>TU1623
gtttgctagtgcatgctttaaaatattcacttttGACTTTAATGGtgcattattaaatgctaataattaacataaaacaaagaaaaatacaggttttacaatgtaatttgttttattgcttccTGGCAATTAATGTTAGCCCACGGaagcttattgtaaagtgtgCAACCATTAAAGATGACAGAAAGTCGCCTGAGGTTTATATTAAGGCTTTTAAGTGGGGACCTTACTACACATGCAACAGATTCTTTATATTGATATCCAGCTGTATTCATTTATGAACATATTGATGTGTTGCTGTACGTTCCCTTATACAACTTACCAGCATATACAGCTCCATACATACTCCATCCAGCGTTGGTATCACGCATATAAACGCATCAgcgtttttatgtttatttttgaccTGCAAATGTATTATTGGGACCTGCAAATGATGTTTCTCATGATTTTCTCACATCTAGCGTATTATCAGTTTTAGCATGCAAAAGAACAACCCCGTGTACTTTTGGAAAAAAGTTTATTGTGAAATGACTGTGTGAAAATCGGGATGGGGGAAATCGGCAGCCTGGCCACAGCAATGTCATGTGCCTTTAACACACAGCTAGAGGTGCTGTTGTAACCCTGGATGGGTGGAGTAAGAAGAAACCAACCCTCACTTCATGAGTGGCCTTTTCCTTCTTCCCCGGTCTCCATCCCGCTGTGGACGGGCGCCCCGGGCGGAACAAGAAGGCAAGGAGGGTCAACTGCATGAAAGGACAATGtaacttccaaaaaaaaaaaaaaaaatgggcaagaaaacaaataaaggggaaaaaactgaATGGTTTAGAAGTGACATCCCATAGTCCTTTTTATTGATTGGTCTTCAAAACAGAATGGATGTCCTGACACCATGGGGTCTGCAGATATAGTTCAGCCTTCTTCACCACTCTCTCAGCGGATGGACTCTTACACGGACATGATGTGCTTGACGAAAGCTGTAAGTGGACACTGCCGTTCTCATCCTCCTGTCCCTGCATGAGAGAGTCGATCTCGGGCTCGGTCATCTTCACTCACCCAGTGTTGAGAGCACAATGCGCAGCTCAGCGCCCATCACTGTGCCGTTGCCCTCTTTGTCGAAGACGCGCAGACCCTCAACGTAGTCATCAACGGTACCCTTCTGGATGGCGTCAACGGTCTTCAGCATGGGCAGGAAAGCTTCAAAGTCAAGTCTTTTGTTGGCCATATCTGTGTGCATACAGTTCCGCATACACATCACAAATCAGTGAGGGGCTGTAAAGCATTTATAATTATGCCCATtcctatttaataaaaatgatatatctTACCGTCAGCAGATGGGTCACCCAGGATTTTCTTCACATCCTTGTTGGTGGGGTTCTGTCCCAGGGCACGCATGATGTCAGCAACCTGGTTGAAGGCAACCTTGCTGTCACCAACTCTGTCGAAGAGACCAAAAGCCTCTTTGAAGTCTGTAACAGAAGGATAACAGAATGTTATCTGGAAGCAGATTTTAAGGGAGGATCATAATGTCATAATCTCAACTAATGTAGGCaagcataaaaaagaaatttatcTCACAACATAGcatcagacaaaaataaattatatattatatttaaattttttattgtattaaatacttttaaattttattttattttattttattttattttattttattttattttaggggCATCATTGCTTTTTTCAAATTAGGTAAATCAAGGAATCTTGTTTTTTTACCAGTGCCTCTCCCACATCACTCCTTTGCCAACTGTACATGCAGCAGAGGAGGAAGGAAGCCAATTTAAAAAGAGCTTAGCAACTGCATTTCCGTGGGCTGTGAGGGAGACCAAGTTGAAAGCGATCCgctaaaagaaaaatagcatCCTATGACTTCTGTGCTCCAGCAGCTGTGCACGAAGGTGGCACTTAATGCGTGACTTGACAGGCGATACCCTCAGCCTTTGCCATACATGGTTACAGTGCTTTACGACTGACACAAGTCAAATACAAGAATGCTGACAGCAATGTAACCTACACCTACAACCAACCGCATTCTTTCTGTACCTAAATAAGCAGCACCTTGCTGTGAACTGACCCTGAGGTTGGGTACTTATGAATTCTTTCTGTAGACAAATATAAAgatcattaacattttaactacTACATCAGAACACGGTACAGCAATTAATTCACTCGACACATGCACTGCATCAAAAAAACTGTACTCAATTCACCAGTCaactaaaacaaatatgtaCTAAAATACATCGTCTTTATGGTCTGCAGTCAAGGTCAGACATTAATCGGTtaaccaaaatataaacaaaacaatatatatgaaatataataaattatgtgaTATTATTTGTCATTCATAAACAAactaacattattaataatacttattattacaaatgatatataaaaaattattctccaatacaaatattttttaacctatttttcatccatttatacaaatgtatttatatattatatattatatatataagcctccaatgttattattttagacatttaggATACATTTCAACTTCATTTTGAgttatactttttgttttattaggtcTGGTGCTatgttgtgggttttttttttctacatcaAGTTCAAATGACTTTTGATGCAACGGCCATACTTTTTTCGTACGTAAAAATTTAAGGAAGCAACCAAACTGAAGTTTACAGAGAAAGAATTGTCCTTCATCAGTATGCGTTATACACACGCAACATCCCCATTACATTGGTAACAATAAGTCATAAAATCATAATGAGCTTGGATGTGTGAAGACTCACCCTCAATCTGGTCAGCAGAGAATTCTCCAGCCTGCCAGAAAGACAAGAATGGATCAGTCCCACTGGCAAACCTGACAACATCTCACAACACACACTACAGTCTGAAATaaggaattattttaaaagacagTAGGTAACATAAGCCCTTTTCGGACACGAGCAAAGCAACAGATTGGAAAGAGCGCATATATCCAGCAGGAGAACAAACCAGCTGCATGATTTTCTCTTTAACACTGATATACAGACTGTGCTTCTTTATACGACACCGCTGTGTCTTGCCCCGCCAAAGTCAATTTGAAAATCGCAGATAGGTGTCCTACTTCATTTGAGGGGGGCTTATTGCCAGTTTCGAGCCAGACGGACAAGAACAAGGTACGATAAGATAGCAAGAGTAATCCAAGTACACACCATGATGGAGTTTTGGGTGCAGGAGCGGAGTGGCAGAAGTCAAGAAGCCGGAGTCCCAGGAGAGTGGTCCTGAGCCATGGAGCAGCTCCTTCTTATTTATGCTATGCTAATGATGTCACGGGGCGGACCTTACGACTCAGAGGAACTTCTTTAACTTTCTTAGGTCAAGCTGGAAGGAAGGCTGCTGCTTTCTCCAATGTGCATGTGCGGCGGTATTTTTAGACTGTGCTCCAGGCTGCTCGTAAGACCTCCCGGCTTCGGTCAGCACTTTAATTTGATGTATTGTGTCTTTATTTGCATCCTTTctgaacgttttttttattctcagtcAGGGATGATGGGCCGTAAATCCTGATGTCACCTGTTGTGCCGACACAACATCTCAGGAAGGCTTTTGATTACAGTGTCGATATTTATAACTTGCATATGGTGGACTCGGCCACTTATGGTTATATGGGAAGATGGAAAAAAACAGTCCTTAAAGCTTATTTTTCACGGCATGGAGGCGTTCACATTTTTT
>TU1624
gtttgctagtgcatgctttaaaatattcacttttGACTTTAATGGtgcattattaaatgctaataattaacataaaacaaagaaaaatacaggttttacaatgtaatttgttttattgcttccTGGCAATTAATGTTAGCCCACGGaagcttattgtaaagtgtgCAACCATTAAAGATGACAGAAAGTCGCCTGAGGTTTATATTAAGGCTTTTAAGTGGGGACCTTACTACACATGCAACAGATTCTTTATATTGATATCCAGCTGTATTCATTTATGAACATATTGATGTGTTGCTGTACGTTCCCTTATACAACTTACCAGCATATACAGCTCCATACATACTCCATCCAGCGTTGGTATCACGCATATAAACGCATCAgcgtttttatgtttatttttgaccTGCAAATGTATTATTGGGACCTGCAAATGATGTTTCTCATGATTTTCTCACATCTAGCGTATTATCAGTTTTAGCATGCAAAAGAACAACCCCGTGTACTTTTGGAAAAAAGTTTATTGTGAAATGACTGTGTGAAAATCGGGATGGGGGAAATCGGCAGCCTGGCCACAGCAATGTCATGTGCCTTTAACACACAGCTAGAGGTGCTGTTGTAACCCTGGATGGGTGGAGTAAGAAGAAACCAACCCTCACTTCATGAGTGGCCTTTTCCTTCTTCCCCGGTCTCCATCCCGCTGTGGACGGGCGCCCCGGGCGGAACAAGAAGGCAAGGAGGGTCAACTGCATGAAAGGACAATGtaacttccaaaaaaaaaaaaaaaaatgggcaagaaaacaaataaaggggaaaaaactgaATGGTTTAGAAGTGACATCCCATAGTCCTTTTTATTGATTGGTCTTCAAAACAGAATGGATGTCCTGACACCATGGGGTCTGCAGATATAGTTCAGCCTTCTTCACCACTCTCTCAGCGGATGGACTCTTACACGGACATGATAGAGTCGATCTCGGGCTCGGTCATCTTCTCACCTGTGACGTGAAAGGTACTTGGTTAGGAATCGTTTATTTCCTATACTTTTTGCTTAATACGAAGCATA

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU1622 False 993 lncRNA 0.46 2 5579526 5607918
TU1623 True 3757 lncRNA 0.42 4 5603314 5607918
TU1624 False 1066 lncRNA 0.40 2 5606603 5607918

Neighbor

gene id symbol gene type direction distance location
klf7a klf7a,LOC107725403,LOC107752450,LOC107676060,LOC107674020,LOC107556267 coding downstream 503915 5038724 ~ 5075611 (-)
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding downstream 682626 4765299 ~ 4896900 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding downstream 840066 4673689 ~ 4739460 (-)
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding downstream 960899 4597080 ~ 4618627 (-)
mnx2b mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047 coding downstream 1005106 4569834 ~ 4574420 (-)
mxa mxa,LOC107725377,LOC107565622,LOC107702551 coding upstream 3990 5611908 ~ 5616115 (-)
LOC122342384 NA coding upstream 17792 5625710 ~ 5629067 (-)
efnb2b efnb2b,LOC107725384,LOC107701778,LOC107590693,LOC107702517,LOC107705455,LOC107565280 coding upstream 38228 5646146 ~ 5655085 (-)
arglu1b NA coding upstream 48719 5656637 ~ 5661762 (-)
radil radil,LOC107722964,LOC107725399,LOC107564693,LOC107590699 coding upstream 138552 5746470 ~ 5766103 (-)
G1124 LOC107701616,LOC107565289,LOC107705456,LOC107702505 non-coding downstream 12548 5561377 ~ 5566978 (-)
G1116 LOC107565289,LOC107701616,LOC107705456,LOC107590690,LOC107702505 non-coding downstream 18671 5560618 ~ 5560855 (-)
G1115 NA non-coding downstream 22184 5556880 ~ 5557342 (-)
G1114 NA non-coding downstream 23776 5555490 ~ 5555750 (-)
G1028 NA non-coding downstream 427684 5150493 ~ 5151842 (-)
G1146 NA non-coding upstream 169180 5777098 ~ 5778154 (-)
G1151 NA non-coding upstream 181749 5789667 ~ 5789919 (-)
G1240 NA non-coding upstream 362472 5970390 ~ 5974062 (-)
G1246 NA non-coding upstream 412638 6020556 ~ 6020931 (-)
G1248 LOC107725398,LOC107692671,LOC107722970,LOC107722977,LOC107590704,LOC107564637,LOC107702540 non-coding upstream 423978 6031896 ~ 6033999 (-)
mdh1b mdh1b other downstream 619316 4956119 ~ 4960210 (-)
G820 NA other downstream 1280333 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 1565239 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 2294740 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 2890062 2688765 ~ 2689464 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 236226 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 503545 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 612686 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 659745 6267663 ~ 6274751 (-)
gng13a NA other upstream 719105 6327023 ~ 6328341 (-)

Expression


Co-expression Network