G1154 (si:dkeyp-9d4.3,LOC107725391,LOC107701782,LOC107564683,LOC107722956,LOC107590702)


Basic Information

Item Value
gene id G1154
gene name si:dkeyp-9d4.3,LOC107725391,LOC107701782,LOC107564683,LOC107722956,LOC107590702
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5797393 ~ 5798851 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU1672
AGATAACCACTTCCTTTGCCACTGTTTCCAAGATTGGACATTTCAAGCATGGCAGCAATGTCTCTTACGCTGCCCCCAGATGAAGTTTTTTCAGAGGCAATGCCACAGTCACTACGTCTGCGCTCCCTGTATGTTACATTGAGCAGCAAACTGTTAGCCCTATTTTCACTAGACCTCGCATCATCTGCTGCAACCTCGTCAGTCAGGTTACCAGTGGAAATTGAAGAGCATGAACGTTTTGGTGGAGTTGGAGGACGAGTCCGTCTGCGCGGCCGAGCTGTAGCGAATGACTGACTGCGATTGACACTGTTAATGTCAAGAGTTTCACTAGAGGCTCTCGAAGAGCTGCTGGGTGTAACCCTGTGTCCACCTAGTGTGGCATATTTCACAGAGGAGTCTGGCATGGGTAAGTCATGCTCAGCATCAGTAACAATGGAATGTCCACGTCTTGGCTGGGGCAGAGTTTGACTATTGCCCTCTTCAGTTTCTCCCTCAGGTGGTAGGCAAAGTAAAGGGACAGTACGAGGGTGAGCATGCGAACGCGGAGAGTCGCAAATCCCTCTAGCCCTGCTCTGTGTTTTTAGTGGGGAGGAAGAAATGTGTGAAGGAGAATTTGAAGCAGAAGATGAAGTTCTGCCTTTAGTAGGGGTGTGTGGAGGTGTTGGGGTGGGACTTTCAATTGAACTGGGTTTCTTCAGAGGAGGAGGGGCATTAGCTCTTTGTATGCCCCTCCCTTGAGTGCTGTGCCGGGGAGAGCTACGCCCCTCCGAACGCCCCTCTGATTTTTTACGTATTCGAACAGAGGGGACAGAGTTCTCATCTGGTTCTGTGCTGGTTTCTAATGATTGTTTTGAATCTGTGCTTTCTTCTAACTGTCTCTCTATGGTGACAATGTCTGCTTCTGGAGATTCGCTCAGTCGTTTGACAGCTAACATCAACTTCTTTTGGTGTCCTTGTTTAGTGATGCCGATCTCTTTTAGGTCCTCCAGGGTAATATCACTAATGAAGTCCATATTGTCATAGCCGTTCTGAACCAATGTCTGGTAGTATTGATTGAGACCAATTGCTGACAGCCACTCAGCCAGATTTGA

Function

NR:

description
PREDICTED: caskin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1672 True 1091 lncRNA 0.44 2 5797393 5798851

Neighbor

gene id symbol gene type direction distance location
LOC122347080 NA coding upstream 14532 5779697 ~ 5782861 (+)
en1b eng1b,en1,LOC107705463,LOC107702516 coding upstream 125075 5668397 ~ 5672318 (+)
LOC122347193 pcnp,LOC107564735,LOC107590694,LOC107702552 coding upstream 186654 5608329 ~ 5610739 (+)
mylz3 mylz3,LOC107725378,LOC107564772,LOC107701775,LOC107702554,LOC107705457 coding upstream 189978 5603707 ~ 5607415 (+)
lancl1 lancl1,LOC107564761,LOC107702553,LOC107590692 coding upstream 197338 5593642 ~ 5600055 (+)
slc5a10 slc5a10 coding downstream 38262 5837113 ~ 5860158 (+)
LOC122342392 LOC107725347,LOC107565259,LOC107701771 coding downstream 77855 5876706 ~ 5879991 (+)
LOC122342401 LOC107725347,LOC107701771,LOC107565259 coding downstream 81844 5880695 ~ 5888652 (+)
cacna1hb LOC107725349,LOC107722927,LOC107590735,LOC107565250,LOC108441470,LOC107701772,LOC107702501,LOC107692701 coding downstream 95742 5894593 ~ 5973200 (+)
myo15ab LOC107725350,LOC107692700,LOC107565240,LOC108441473 coding downstream 185587 5984438 ~ 6019955 (+)
G1091 NA non-coding upstream 7817 5737887 ~ 5789576 (+)
G1086 NA non-coding upstream 122710 5674372 ~ 5674683 (+)
G1064 mxa,mx1,LOC107702551 non-coding upstream 171117 5593214 ~ 5626276 (+)
G1060 NA non-coding upstream 173449 5615720 ~ 5623944 (+)
G1061 NA non-coding upstream 174512 5614387 ~ 5622881 (+)
G1161 NA non-coding downstream 33458 5832309 ~ 5861878 (+)
G1162 NA non-coding downstream 34244 5833095 ~ 5841013 (+)
G1195 LOC107751037 non-coding downstream 276847 6075698 ~ 6077286 (+)
G1199 NA non-coding downstream 290658 6089509 ~ 6089855 (+)
G1200 NA non-coding downstream 291322 6090173 ~ 6090453 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 771479 4979125 ~ 5025914 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other upstream 820130 4967186 ~ 4977263 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other upstream 852552 4938181 ~ 4944841 (+)
G826 NA other upstream 1439097 4358007 ~ 4358296 (+)
G824 NA other upstream 1440133 4356698 ~ 4357260 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 80609 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 258553 6057404 ~ 6087655 (+)
G1318 NA other downstream 487007 6285858 ~ 6287198 (+)
G1414 NA other downstream 734651 6533502 ~ 6536957 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 912784 6711635 ~ 6845548 (+)

Expression


Co-expression Network