G1292


Basic Information

Item Value
gene id G1292
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6227292 ~ 6277288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU1874
ATTTTTATGTGTGTACTGtcttttcatgtattttatgcatctttaattattcatttttacttaattttttttttttttttttttttttttttttttttTACAGTCTTTTCAGagtctttattttttgtattgtactGAAGGAACGAGGAGCTTGTGCATGTATCTAGCAGACAGTGCCGCAGAGCTGCAAATCACAAGCAGCCACAAACAAAACTATGAACACCGATTTAAACATGTAtctaaatacaaaaagaataaagaatgaTGAAGAACAGCCGAAACATAAACAGTTCCAGACAAAAGCTCCGTGGTTTTCGTCATCCGATGGGA
>TU1877
ttttttttttttttttttTACAGTCTTTTCAGagtctttattttttgtattgtactGAAGGAACGAGGAGCTTGTGCATGTATCTAGCAGACAGTGCCGCAGAGCTGCAAATCACAAGCAGCCACAAACAAAACTATGAACACCGATTTAAACATGTAtctaaatacaaaaagaataaagaatgaTGAAGAACAGCCGAAACATAAACAGTTCCAGACAAAAGCTCCGTGGTTTTCGTCATCCGATGGGA
>TU1878
ATTTTTATGTGTGTACTGtcttttcatgtattttatgcatctttaattattcatttttacttaattttttttttttttttttttttttttttttttttAGTCTTTTCAGagtctttattttttgtattgtactGAAGGAACGAGGAGCTTGTGCATGTATCTAGCAGACAGTGCCGCAGAGCTGCAAATCACAAGCAGCCACAAACAAAACTATGAACACCGATTTAAACATGTAtctaaatacaaaaagaataaagaatgaTGAAGAACAGCCGAAACATAAACAGTTCCAGACAAAAGCTCCGTGGTTTTCGTCATCCGATGGGA

Function

GO: NA

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU1874 True 330 lncRNA 0.47 2 6227292 6277288
TU1877 False 250 lncRNA 0.52 2 6249630 6277288
TU1878 False 327 lncRNA 0.38 2 6227292 6277288

Neighbor

gene id symbol gene type direction distance location
zgc:77849 zgc:77849,LOC107722949,LOC103038624,LOC107692663,LOC107564565,LOC108439082,LOC107702534,LOC107590708 coding upstream 113767 6107861 ~ 6113525 (+)
fscn1b fscn1,fscn1b,LOC107692665,LOC107564588,LOC107722932,LOC107590764,LOC107702511 coding upstream 127462 6094349 ~ 6099830 (+)
slc29a4b si:ch211-160d14.6,slc29a4,LOC107692733,LOC107590706,LOC107565581,LOC107575408,LOC107722931,LOC107702536,LOC108439098 coding upstream 156656 6062142 ~ 6070636 (+)
smcr8b LOC107725400,LOC107564620,LOC107692669,LOC107702539,LOC107722967 coding upstream 187448 6035257 ~ 6039844 (+)
mief2 mief2,LOC107725398,LOC107564637,LOC107692671,LOC107722970,LOC107590704,LOC107702540 coding upstream 193494 6028082 ~ 6033798 (+)
rasd3 zgc:152698,LOC107565554,LOC107692726 coding downstream 11442 6288730 ~ 6292181 (+)
plk1 plk1,LOC107722962,LOC107590713,LOC107702528 coding downstream 17461 6294749 ~ 6299522 (+)
chtf18 chtf18,LOC107692658,LOC107702521,LOC107722946,LOC107725360 coding downstream 36682 6313970 ~ 6327004 (+)
uncx4.1 uncx4.1,LOC107725405,LOC107564450,LOC107692652,LOC107722947,LOC107702525,LOC107590715 coding downstream 80540 6357828 ~ 6362500 (+)
elfn1b elfn1b,LOC107564393,LOC107714143,LOC107692646,LOC107722936,LOC107590768,LOC107702506 coding downstream 202848 6480136 ~ 6619283 (+)
G1287 socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765 non-coding upstream 5896 6219924 ~ 6221396 (+)
G1206 NA non-coding upstream 112011 6114964 ~ 6115281 (+)
G1201 NA non-coding upstream 136135 6090845 ~ 6091157 (+)
G1200 NA non-coding upstream 136839 6090173 ~ 6090453 (+)
G1199 NA non-coding upstream 137437 6089509 ~ 6089855 (+)
G1301 NA non-coding downstream 1929 6279217 ~ 6280631 (+)
G1332 LOC107692651,LOC107725361,LOC107590714,LOC107722945,LOC107702522 non-coding downstream 54788 6332076 ~ 6345567 (+)
G1348 NA non-coding downstream 123104 6400392 ~ 6400757 (+)
G1357 NA non-coding downstream 159666 6436954 ~ 6437177 (+)
G1358 NA non-coding downstream 160520 6437808 ~ 6443476 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other upstream 139637 6057404 ~ 6087655 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other upstream 346158 5879460 ~ 5881134 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 1201378 4979125 ~ 5025914 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other upstream 1250029 4967186 ~ 4977263 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other upstream 1282451 4938181 ~ 4944841 (+)
G1318 NA other downstream 8570 6285858 ~ 6287198 (+)
G1414 NA other downstream 256214 6533502 ~ 6536957 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 434347 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other downstream 494198 6771486 ~ 6782141 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other downstream 569212 6846500 ~ 6860270 (+)

Expression


Co-expression Network