G136 (kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674)


Basic Information

Item Value
gene id G136
gene name kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1119719 ~ 1120721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU190
CTTTCTATGAGGTCACAGAGATAGTTGAACGTGTGCACGGCTTCCTCTTTATCCTCGttgagcggcagccaggagagCCAGTGAGGGAGGATCTCGCTGACGTTGACGCACTCGGGCCGGTACTTCATGACTTTGGCCACGGCAGAGATGCAGTTCTCCGTGGCGTTGACGTTTTCTTTAGCTCTGGATTCTGGAGACTGGATCACGCCCACAAGCAGCGGCACGGCCTCTGGAAGAACCTGTGAAGGCAGGCCTGTAGCTGTCTCCTCCAAACTGAGCCATGACCCCGACGCCGTACGCAGCCGCCTGCCGAACCTCCGGACTCGTGTCACACAGCGCCTGCATCATGGGCCGCAGGAAGTACTCGGCGTATTTGAAGGAAGAAGGGCTGCAGTGTTCGATGACGTCATCAAATATGCACAGACCCCACTGTCTGTCCGCCCAGGGTCTGTGAGGACACTGTCA

Function

symbol description
kpnb3 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and ventral mesoderm. Orthologous to several human genes including IPO5 (importin 5).
ipo5 Enables RNA binding activity. Involved in ribosomal protein import into nucleus. Located in membrane.

NR:

description
PREDICTED: importin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190 True 465 TUCP 0.44 2 1119719 1120721

Neighbor

gene id symbol gene type direction distance location
LOC122341978 NA coding upstream 71908 1043183 ~ 1047811 (+)
ggact.3 NA coding upstream 73930 1043185 ~ 1045789 (+)
LOC122342042 LOC107746594,LOC107582328,LOC107686751 coding upstream 380797 729071 ~ 738922 (+)
LOC122337612 cd38,LOC107568972,LOC107693813 coding upstream 527378 567855 ~ 592341 (+)
LOC122347479 LOC107730391,LOC107653668,LOC107677846,LOC107555244,LOC107746981,LOC107559791 coding downstream 124442 1245163 ~ 1250334 (+)
LOC122347468 LOC107653668,LOC107730391,LOC107746981,LOC107559791,LOC107677846,LOC107555244,LOC107730385 coding downstream 125972 1246693 ~ 1261968 (+)
LOC122351641 NA coding downstream 207664 1328385 ~ 1331549 (+)
LOC122350806 NA coding downstream 214203 1334924 ~ 1346793 (+)
LOC122348945 LOC107718016,LOC107555266,LOC107568777,LOC107709315,LOC106575573,LOC108429863,LOC105889574 coding downstream 335365 1456086 ~ 1465285 (+)
G141 NA non-coding upstream 36340 1050762 ~ 1083379 (+)
G128 NA non-coding upstream 209022 910489 ~ 910697 (+)
G121 urp2,LOC107698908,LOC107555268,LOC107568775,LOC107718017,LOC107709382,LOC107653671 non-coding upstream 229663 888664 ~ 890056 (+)
G120 NA non-coding upstream 231356 885518 ~ 888363 (+)
G84 NA non-coding upstream 496981 616164 ~ 622738 (+)
G162 kpnb3,ipo5,LOC107677849,LOC107653674,LOC107555240 non-coding downstream 5745 1126466 ~ 1128090 (+)
G138 NA non-coding downstream 6045 1126766 ~ 1212143 (+)
G139 rap2ab,rap2a,LOC105911819,LOC106512668,LOC106582448,LOC105933629,LOC101166017,LOC103391592 non-coding downstream 27665 1148386 ~ 1151169 (+)
G175 NA non-coding downstream 97344 1218065 ~ 1218734 (+)
G207 NA non-coding downstream 208874 1329595 ~ 1336345 (+)
LOC122341994 NA other upstream 670079 445940 ~ 449640 (+)
G10 NA other upstream 941519 177716 ~ 178200 (+)
LOC122327253 NA other downstream 318319 1439040 ~ 1441666 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other downstream 1065100 2185821 ~ 2192464 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 1362919 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 1372851 2493572 ~ 2558527 (+)
pcid2 pcid2 other downstream 1390851 2511572 ~ 2518385 (+)

Expression


Co-expression Network