G1415 (LOC107747400,LOC107719078)


Basic Information

Item Value
gene id G1415
gene name LOC107747400,LOC107719078
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6539629 ~ 6541531 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2063
AATTTACAAACAGAGCAAGATAGCAACTCACTCTATATATTCTTTCTTGTTGTCATTGGTTACAACCATGTCTGATCCACTTGGCTTCAAATCAACCTGATACGtctataaatacatacacaagaaaacatcaaatatattacaatgttcttttaataaatgacatGCTTGTAATTAGACAAATAATGGTGTAACCTGTCCGAAGTTGTCCTCATCAATGCAGAACCGCAAGTCCAGTTCAGTGGGGTCGTTTTCCAGAATCCACTTTAGAGAGTTGTAGTATTCACTGTCCTGCATGGTGTACATGAACATTAAACAGTAGcgagaaaaatgagaaaaattatGCCCACTAAATTCAGATCAGTGCCTTTAAATAATACTTCAATGAGAATTCTGTTTTATGAGGTTTCTGCACTGTTTTGTTGCACTGTGggctatatattaaaattgattggtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcacgcaCCACTGACTCCATATCATTCAGCGTGATCTGCTTGCCCAGCATCATTTTATAGAACGGTCGAATGAAGAAACCGTCTAACAGCTTTCCGTGATACACAGCCATGCCGGCCACTCGACCGATGAACTTGAAGTATGAGAGGTGATCCTCATTACAGAGGCCGGAGTTTGGATTGATCTGAAGCGTGTAGTTATCtctgcagacagacagaagggagacattaaataaatgaattatgatGCCATCTCTGCTGTGTCCTCTAATGAGTGTCACGGGTGGAGATTTAACAAGATAACAGACCGGCTCTGTAACACAAGAAATGCTCGCTTTCTTTCAGAACAacgatacagacagacagatatgtacagagagagaggcagacatATTTATAAACAGACAGGCATTTATAGATAGATACGTAGAGAGACAGACATGTAAACATtgtagacagatagacagacatatacatgcatggaaACAGATATAGACAAACAGATGAGCAAATAAAAAGATTGAGAAAAATCTGATATAATCAGATGAAATAAGCCAGCCAGTcagatgaaaaaatatatataaagtaaacagattataacataaaaataagggAGCCATAAAAAAGAAGATTCTTGCCCACAGCTAAAAACTGCATTAGAAGTGAAGTAAGAACTGGAAAAGGTGGTAAAAGTGCAAGTTAGCTAGTGAAGCCTCTGGAACGAATGCTAAAAGGAGATACAAATACGAGGTGAGAAGCGGAGGTGGGTGTTTCGGGATTTATGTGTCAGTTTGAGCAAATCTGCCAAAGTCAAACTCGACAAAGCTGTAGTGGACAAGCACTTGGACACTTACGTGGCTGAGTACTCAAACAACCCATAATAAGGGTTAAACATCTCCTTGGAGAGCAGGAAGAACCATTCTCTGGCCACTCCCCCGTAGTCCAGGCCTTTCTCCGATTCAAACTCAATCCAGAGACGAGCCTTTAGACTGTCGGGTCTCTTCAGGGACATGATTCGTCTGTAAGACTCCTCCAAGATGTTATTCCTGTGTAGCTTCATCTCAAAACGGTTCGGAATATCTGCCTatgggagagagggagaaagacaaaaataataataaaataataataataattaactgtagtaatattaagtaatattaagGTTTGGAACAATCAGAGCACTGTAAACGACTGCGTTCCTGTCGTGTGAAGAACAATTTAACAccca

Function

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2063 True 1726 lncRNA 0.36 2 6539629 6541531

Neighbor

gene id symbol gene type direction distance location
uncx4.1 uncx4.1,LOC107725405,LOC107564450,LOC107692652,LOC107722947,LOC107702525,LOC107590715 coding upstream 177129 6357828 ~ 6362500 (+)
chtf18 chtf18,LOC107692658,LOC107702521,LOC107722946,LOC107725360 coding upstream 212625 6313970 ~ 6327004 (+)
plk1 plk1,LOC107722962,LOC107590713,LOC107702528 coding upstream 240107 6294749 ~ 6299522 (+)
rasd3 zgc:152698,LOC107565554,LOC107692726 coding upstream 247448 6288730 ~ 6292181 (+)
cacng3a cacng3,LOC107590766 coding upstream 272128 6262422 ~ 6267501 (+)
LOC122348963 elfn1b,LOC107692646,LOC107714143,LOC107564393,LOC107722936,LOC107590768,LOC107702506 coding downstream 133866 6675397 ~ 6693693 (+)
pmm2 pmm2,LOC107692644,LOC107590721,LOC107722953 coding downstream 220448 6761979 ~ 6765915 (+)
LOC122342636 LOC107692694,LOC107565156,LOC107590746,LOC107722971,LOC107714127,LOC107663320 coding downstream 253863 6795394 ~ 6796388 (+)
pdia2 LOC107692722,LOC107714133,LOC107663318,LOC107565477,LOC107722973,LOC107590747 coding downstream 256791 6798322 ~ 6802759 (+)
si:dkeyp-75b4.8 LOC107692693,LOC107565146 coding downstream 261668 6803199 ~ 6806334 (+)
G1367 NA non-coding upstream 82271 6456067 ~ 6457358 (+)
G1358 NA non-coding upstream 96153 6437808 ~ 6443476 (+)
G1360 NA non-coding upstream 96769 6442557 ~ 6442860 (+)
G1357 NA non-coding upstream 102452 6436954 ~ 6437177 (+)
G1348 NA non-coding upstream 138872 6400392 ~ 6400757 (+)
G1405 ugt5b1,LOC107692647,LOC107714140,LOC107564400 non-coding downstream 42445 6583976 ~ 6591255 (+)
LOC122351800 lratb,LOC107714130,LOC107590749,LOC107665934,LOC107758869,LOC108258974 non-coding downstream 368845 6910376 ~ 6911075 (+)
LOC122351810 NA non-coding downstream 369550 6911081 ~ 6912265 (+)
LOC122351804 lratb,LOC107665934,LOC107590749,LOC107758869,LOC107714130 non-coding downstream 370748 6912279 ~ 6916697 (+)
G1565 LOC107590778 non-coding downstream 523594 7065125 ~ 7068197 (+)
G1414 NA other upstream 2672 6533502 ~ 6536957 (+)
G1318 NA other upstream 252431 6285858 ~ 6287198 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other upstream 451974 6057404 ~ 6087655 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other upstream 658495 5879460 ~ 5881134 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 1513715 4979125 ~ 5025914 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 170104 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other downstream 229955 6771486 ~ 6782141 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other downstream 304969 6846500 ~ 6860270 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other downstream 605342 7146873 ~ 7152220 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other downstream 1178734 7720265 ~ 7721425 (+)

Expression


Co-expression Network