rgs11 (rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145)


Basic Information

Item Value
gene id rgs11
gene name rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6771486 ~ 6782141 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2148
attttttgttatttccaATTATAGTTGCATTACTTAAGCTATTTTAGACAAgtgttaattataataaatatacagggTAATTGAAATCTGTTCATCTAAATGAATCTGATGAATCATTTAGTTACTGTGTCAAAAAagcttaattaaatattttaaaatgcatgtcagacatttaaaaaggatTTGGTATGGTCGTATATTGGCCACATTAAATGACTATCAGCTGTTCTCTGATACTAAATAATAATCTCCATGTATAAAtggaatttatataaataaataacatggaATTTTGCACCGCTGTGGTacttttgcagtattttttttagtttaaatctcTCTTTATATAAACCTCTTTCATTTTAACCTAGTTCTGAGGAGCGTCCCAAAACTGTCGTTCTCTTCTGTACTTTTGGAGCTTTAATAGATTCCATTTTTATCCTTCTGCACACtctgtatatatgaataatgtAACAAGTTTTCGTGTTCCTCTCTCTCATCCCTTCCTTCTCATTATCTTCTTTTGTCCccttttctctgtgtttctctctcgtTCCCCTTCTTGGTTTCTCTCGTGTTATCAGCGGAGAACTTGTGTTTCTGGCAGGCCTGTGAAGACGTTCGTCACGGCGAGACTGCAAAAATCCCAGAGAAAGTGGATGAGGTTTACAAGCAGTTCCTGGCTCCTGGTGCAAGCCGCTGGGTGAATATTGACAGCAAGACCATGGAAAAGACCCTGGAAGGACTCAAGCGTCCCCACCGTTTTGTCTTGGATGATGCTCAAATGCACATTTACTTCCTCATGAAAAAGGATTCTTACCCTCGTTATCTCAAATCTGAACTGTACAAGAACTTATTAGCCAGAGCTATAGTACCACAGGAGACTAAGAAAAGTGTTTTCCCGTTCATGCGTCGTCAGCGTCACTCCAGCCCCTCGCCTGCCCTCGCCACCCAAACAGCAGAGGATGATGGGAAGGCAAAGAACTCTAACGCTGTCAAAAACAATTCTGGAACGGCATCCCGGCTTTAAACACGcacactgcttttttttgtgctgttatATTACCTAACACAGTTGTAAGTGGCATCTGCGTTGCTTCCCGTTGTGCTCTACAAAGCAGATATTTCAGAATATAACTAAAGGTCATTATTTAATGAGAGTGCTTGATTCCACTGTTCACATTTCTCTATATGATACGTAGAAATACAGCTTTCCATCCATTTTAAAGACACTATTTATGACGTAGCAATAATGCCGTAAGACTTCAGATACATTATCAGCTTTCACCTGTTCCATGGATGGCGTTTATGTCACTTGCCTTTTTCAcacatttgtcatgtttttaatgtatttatttgataataaaatgttcctttctGC
>XM_043251225.1
CTCCGGCTTCAGTGTGAGCCTCATCCTGCTCTCTTCAACTTCACATCCAGAGATCACGAGCGGCCGGCAGCATGACCATCAACACACTCAGTCAGGACGGAGTGCAGCGGCAGCAAATGCCCTGTCTGACCAAGATGGAGCGCATGATCATATCCATGCAGGACCCTGATATGGGCATCAAGTTGCGCAACCAGCGTCTGCTCATCACGGTCATACCACACGCAATGACTGGTGTAGACATTGTTGAATGGCTGATTAAGAAGTTTTCTATTTCTGATGAAGAGGCATTGCACGTAGGACAGCTCTTTGTAAAGTATGGATACATTTATCCTTTAAAAGAGCCAAGAAACCTTATTCTAAAAGCTGATGATTCACCATATCGCTTTCAGACTCCGTATTACTGGATGTCGACACGCTGGCCTTCTTCAGAACTGGACTATGcAATCTACTTGGCTAAGAAGAATATCCGAAAACAAGGAGAACTAATTGAGTATGAAAAGGAGTGCTATAATGCTTTACATAAACGTATCAACCACACCTGGGACTTTGTTGTGATGCAGGCTAGAGAGCAGCTCAGGGCATCAAAACAGCGTCGAAAAGCAGATCGTATCGTGCTGGAGTGTCAGGAACAAGCTTTCTGGCTGGTCAACAGACCTCCTCCTGGTATGCTGGACAGTATAGATCATGGACCGGAGAGAAGAACCATGAACACACGAGTGCAGCTGAATGCAGAATTCTACAAAAAAGAGATTGAACATAACAGGATAAGCCTGGCAAGGAATCGTGTAAAGTCCTCCATTTGCCTTGAGAgTTATGTTAAGTACTGTGAGCAGTACCAGCCCCACGACCCCATAATGCAAGGATGTCTTCCCAGCAACCCCTGGATCACAGATGATATCATGTTTTGGAACATGAATTCTGAAACAGTGACTGTGCCGACTAAACTGCGTGTGGAGCGCTGGAGCTTCAGCTTCATGGAGCTGCTCAACGACTCAATGGGAAGAAAAGAGTTTCTCACTTATTTGGAGAAAGAATTCAGCGCGGAGAACTTGTGTTTCTGGCAGGCCTGTGAAGACGTTCGTCACGGCGAGACTGCAAAAATCCCAGAGAAAGTGGATGAGGTTTACAAGCAGTTCCTGGCTCCTGGTGCAAGCCGCTGGGTGAATATTGACAGCAAGACCATGGAAAAGACCCTGGAAGGACTCAAGCGTCCCCACCGTTTTGTCTTGGATGATGCTCAAATGCACATTTACTTCCTCATGAAAAAGGATTCTTACCCTCGTTATCTCAAATCTGAACTGTACAAGAACTTATTAGCCAGAGCTATAGTACCACAGGAGACTAAGAAAAGTGTTTTCCCGTTCATGCGTCGTCAGCGTCACTCCAGCCCCTCGCCTGCCCTCGCCACCCAAACAGCAGAGGATGATGGGAAGGCAAAGAACTCTAACGCTGTCAAAAACAATTCTGGAACGGCATCCCGGCTTTAAACACGcacactgcttttttttgtgctgttatATTACCTAACACAGTTGTAAGTGGCATCTGCGTTGCTTCCCGTTGTGCTCTACAAAGCAGATATTTCAGAATATAACTAAAGGTCATTATTTAATGAGAGTGCTTGATTCCACTGTTCACATTTCTCTATATGATACGTAGAAATACAGCTTTCCATCCATTTTAAAGACACTATTTATGACGTAGCAATAATGCCGTAAGACTTCAGATACATTATCAGCTTTCACCTGTTCCATGGATGGCGTTTATGTCACTTGCCTTTTTCAcacatttgtcatgtttttaatgtatttatttgataataaaatgttcct
>XM_043251232.1
TATCCATGCAGGACCCTGATATGGGCATCAAGTTGCGCAACCAGCGTCTGCTCATCACGGTCATACCACACGCAATGACTGGTGTAGACATTGTTGAATGGCTGATTAAGAAGTTTTCTATTTCTGATGAAGaaaacaGGCTGCATGGTTCAGAAAAGCCCTAATAAACAAGTAATGCTGCACCCAGCTGTGTCTGGAATAAACAAGACTCCAGAGAGTTTGGGAGATCTGTGCACTGCAATGAGGGAACACCTTGTGTAAGCAACCACTAGATGAAATAGGCATTGCACGTAGGACAGCTCTTTGTAAAGTATGGATACATTTATCCTTTAAAAGAGCCAAGAAACCTTATTCTAAAAGCTGATGATTCACCATATCGCTTTCAGACTCCGTATTACTGGATGTCGACACGCTGGCCTTCTTCAGAACTGGACTATGcAATCTACTTGGCTAAGAAGAATATCCGAAAACAAGGAGAACTAATTGAGTATGAAAAGGAGTGCTATAATGCTTTACATAAACGTATCAACCACACCTGGGACTTTGTTGTGATGCAGGCTAGAGAGCAGCTCAGGGCATCAAAACAGCGTCGAAAAGCAGATCGTATCGTGCTGGAGTGTCAGGAACAAGCTTTCTGGCTGGTCAACAGACCTCCTCCTGGTATGCTGGACAGTATAGATCATGGACCGGAGAGAAGAACCATGAACACACGAGTGCAGCTGAATGCAGAATTCTACAAAAAAGAGATTGAACATAACAGGATAAGCCTGGCAAGGAATCGTGTAAAGTCCTCCATTTGCCTTGAGAgTTATGTTAAGTACTGTGAGCAGTACCAGCCCCACGACCCCATAATGCAAGGATGTCTTCCCAGCAACCCCTGGATCACAGATGATATCATGTTTTGGAACATGAATTCTGAAACAGTGACTGTGCCGACTAAACTGCGTGTGGAGCGCTGGAGCTTCAGCTTCATGGAGCTGCTCAACGACTCAATGGGAAGAAAAGAGTTTCTCACTTATTTGGAGAAAGAATTCAGCGCGGAGAACTTGTGTTTCTGGCAGGCCTGTGAAGACGTTCGTCACGGCGAGACTGCAAAAATCCCAGAGAAAGTGGATGAGGTTTACAAGCAGTTCCTGGCTCCTGGTGCAAGCCGCTGGGTGAATATTGACAGCAAGACCATGGAAAAGACCCTGGAAGGACTCAAGCGTCCCCACCGTTTTGTCTTGGATGATGCTCAAATGCACATTTACTTCCTCATGAAAAAGGATTCTTACCCTCGTTATCTCAAATCTGAACTGTACAAGAACTTATTAGCCAGAGCTATAGTACCACAGGAGACTAAGAAAAGTGTTTTCCCGTTCATGCGTCGTCAGCGTCACTCCAGCCCCTCGCCTGCCCTCGCCACCCAAACAGCAGAGGATGATGGGAAGGCAAAGAACTCTAACGCTGTCAAAAACAATTCTGGAACGGCATCCCGGCTTTAAACACGcacactgcttttttttgtgctgttatATTACCTAACACAGTTGTAAGTGGCATCTGCGTTGCTTCCCGTTGTGCTCTACAAAGCAGATATTTCAGAATATAACTAAAGGTCATTATTTAATGAGAGTGCTTGATTCCACTGTTCACATTTCTCTATATGATACGTAGAAATACAGCTTTCCATCCATTTTAAAGACACTATTTATGACGTAGCAATAATGCCGTAAGACTTCAGATACATTATCAGCTTTCACCTGTTCCATGGATGGCGTTTATGTCACTTGCCTTTTTCAcacatttgtcatgtttttaatgtatttatttgataataaaatgttcct

Function

symbol description
rgs11 Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Orthologous to human RGS11 (regulator of G protein signaling 11).

NR:

description
PREDICTED: regulator of G-protein signaling 11

GO: NA

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
TU2148 False 1381 TUCP 0.41 4 6779618 6782141
XM_043251225.1 True 1832 mRNA 0.45 17 6771486 6782135
XM_043251232.1 False 1829 mRNA 0.44 17 6772416 6782135

Neighbor

gene id symbol gene type direction distance location
pmm2 pmm2,LOC107692644,LOC107590721,LOC107722953 coding upstream 5571 6761979 ~ 6765915 (+)
LOC122348963 elfn1b,LOC107692646,LOC107714143,LOC107564393,LOC107722936,LOC107590768,LOC107702506 coding upstream 77793 6675397 ~ 6693693 (+)
elfn1b elfn1b,LOC107564393,LOC107714143,LOC107692646,LOC107722936,LOC107590768,LOC107702506 coding upstream 152203 6480136 ~ 6619283 (+)
uncx4.1 uncx4.1,LOC107725405,LOC107564450,LOC107692652,LOC107722947,LOC107702525,LOC107590715 coding upstream 408986 6357828 ~ 6362500 (+)
chtf18 chtf18,LOC107692658,LOC107702521,LOC107722946,LOC107725360 coding upstream 444482 6313970 ~ 6327004 (+)
LOC122342636 LOC107692694,LOC107565156,LOC107590746,LOC107722971,LOC107714127,LOC107663320 coding downstream 13253 6795394 ~ 6796388 (+)
pdia2 LOC107692722,LOC107714133,LOC107663318,LOC107565477,LOC107722973,LOC107590747 coding downstream 16181 6798322 ~ 6802759 (+)
si:dkeyp-75b4.8 LOC107692693,LOC107565146 coding downstream 21058 6803199 ~ 6806334 (+)
si:dkeyp-75b4.10 NA coding downstream 29912 6812053 ~ 6813644 (+)
trim2b trim2b,trim2,LOC107665973,LOC107564373,LOC107758867,LOC107714129 coding downstream 32969 6815110 ~ 6828152 (+)
G1405 ugt5b1,LOC107692647,LOC107714140,LOC107564400 non-coding upstream 180231 6583976 ~ 6591255 (+)
G1415 LOC107747400,LOC107719078 non-coding upstream 229955 6539629 ~ 6541531 (+)
G1367 NA non-coding upstream 314128 6456067 ~ 6457358 (+)
G1358 NA non-coding upstream 328010 6437808 ~ 6443476 (+)
LOC122351800 lratb,LOC107714130,LOC107590749,LOC107665934,LOC107758869,LOC108258974 non-coding downstream 128235 6910376 ~ 6911075 (+)
LOC122351810 NA non-coding downstream 128940 6911081 ~ 6912265 (+)
LOC122351804 lratb,LOC107665934,LOC107590749,LOC107758869,LOC107714130 non-coding downstream 130138 6912279 ~ 6916697 (+)
G1565 LOC107590778 non-coding downstream 282984 7065125 ~ 7068197 (+)
G1577 LOC107723159,LOC107723172,LOC107565422,LOC107758837,LOC107590752,LOC107758876 non-coding downstream 353655 7135796 ~ 7143741 (+)
G1414 NA other upstream 234529 6533502 ~ 6536957 (+)
G1318 NA other upstream 484288 6285858 ~ 6287198 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other upstream 683831 6057404 ~ 6087655 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other upstream 890352 5879460 ~ 5881134 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 1745572 4979125 ~ 5025914 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other downstream 64359 6846500 ~ 6860270 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other downstream 364732 7146873 ~ 7152220 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other downstream 938124 7720265 ~ 7721425 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 1172570 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 1824684 8606825 ~ 8607785 (+)

Expression


Co-expression Network