G1565 (LOC107590778)


Basic Information

Item Value
gene id G1565
gene name LOC107590778
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7065125 ~ 7068197 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2293
TTCATAGtcgtctttttttattcatcagtcATCTACACCTCACCAAACACTTATCAAAAGCCTCAGCTAATGAGCTGCTGCCAGGAAACACAAAACCTGCACGTTCCTCCCATTACAACATTTGCATATACAGTTCAACCTCAGGTCAAtaactttcacacacactctaaacACTGAGAATAGGCATACAAACACCTGCAGgagcgctctctctctttctcacacacacacacacacacacacacacacacacaccttttggAAATAGCGACGCCTGATATCAGATAAACAACTTAAGTAAACAATACagctaaagaaaatattaaattaaaatgtaactcaAACATTCCCTGTAAGTGACatcacatacacaaacacagcagacGCAAAAACTAATATGAACAGATTGAGCAAAAATGGTACACCCTTATTTGGATAACGGGAAAGAAGGAAAAGGTTCCAAGTATTTTCTCAGGATTTCTCCCATTATCTGCATTACTGAAACGAGAAATGTTGGAAATTTAAAGAATTGACGTGAGATACCGAGTTCCAGACCATTCaagcttagaaaaaaaaattaaaaaaaaaaaaaactatttaagttgaatcacaaaacaatgtttttgcatttgttgcatcACAATCacaaagtaaaaatttttttttttttacacagaaaaagataaaatagatatttttctgTATTGGTACTGATATTTatactgatatttttatatatattttaaaattagaaccacctaaattatattaacactgaaaaagctccaAGTACGTATATTTCCTTAATTTGAATCTACAAAAGATCTTTAACTATATGAATTCAACTGCAATTAAAAGTAACAGCAACAGGCATAAGAAAACTTaactaaatttatatataagctAAATTTCAGGGAGAAAAACCAGTGAGATGAGTCAAGAGTAATAAAAATGAGAACAAGGATTTCCAGAATCCATTCCAACAGCTTGCAAACTTGATTGATTTAAGACACCAGAGTCCTCAAAGGCAGACATTATCCAGGAAGGAAGATTTCAGCTCGTTTACAGTGTTACGGACATGAATCCAGCATGAGaacaaacacaagcaaacatCCAAGCTACAGTATAGTTTGATTGGTCTATCTTCCATTTTTGGGATTTGAAATGGCATTTGATTTTAGCTTGTTGCTGGACGGAATTAATGATCTAGAATGAGGACCTCAATATTACCTTCTTCTAATAGACTAAAACTCAACGTACAGCTTAGTACCAGTCATAAATTTAGATATCAAGGAGACAagtgtcagaaaaaaaaaatggaaaaagagcaaagaaatTGATCAGAGTTCAGTTTTATCCTTATTAAGAGGAACTttcttctggatctcctcctcATCTGAGGTGTATCCGGCTTCTTCAGTTTTCCGCTTGCTGGATTCAGCATTGGTCAGTTTggactttttcttcttcttcttcaccttCTTCTCCTTTTTCTGCCCATCCTCGCTGTCTTTACCTTTCTTCTTCttgcctttctttttcttcttgtccTCTGCTATAGCTGCCATGTCTCCCTTTTTCCCAGTCCAGTTCTCTTTAAGACAGTCTGCGCAGAGAACCAGAAGTACATGTTTGCACAGTCCTgatctttatactttatactgaAAGTGATCAAATCAGAGCTGTGTTTTCAGGAAATTATGTCTTTTTCTGGCAGATCTTATATTGGTTGCTATAGCAATTGCAGAAAACCCAGTGCAATGCCAAATTAATCTTTTATATCAGGAAGCAACAAGCTAGTCATAAGAAAGCTATTTGTATTTGGTCATTTAAACCCCAAATggtatttttattgaatattcgtcatatttactaaatattctCACGAAAAATGATCTTTACTAAATATCATAATGATCCATACAACTgcttgttggctattgctacaaatatacttgtGCTACTTATGGCTGGTTTAGTGGTCCAGTATACACATACGCATATATAGACAAATTGGCAGATATACATACAGATATACTTGCTCTACACATTATGTCTTTCAATATTACTGCTCCTGTGGCCTTGAGTAGCTTCCTGTAAATTCTTCCCAGAAACAATAGCTCTTAAAGATGGTGCCgataaaagagatgaaaaggtttAGTCTGCAAGTAGTCATAATATTATGTCTAGAGCGGTTTAACTGTTATAAAAGAGGTTGTGATGGAGTGAAACAGCTGTTAGTTTCACATTACCGGTGTCTTGTCCTTTCAGCACATGTTTTTCACACAGGTAAGTGGTGAGATCTTCCTCCTGGTTGCCTTTATACCAGTCTTCAATGACTTCTTCATACTGCTCTACCATCACGTCACACTGgttttttgAGATCTGCCACTTCTGCACTGGTCTCGTTCCACAGTTCATAAGGAATGTCCATGACCACCTTCACGCCTTTATTAACCAGGTTATGTAAGGTAGAGAATGTCTCAGACATACCCTGAGCGGAGAAAGACAAATGATCAGATTTTACCAAAAACATTctattaatacagtaattaagACCGAAATTCAAAATTGCACACAGTACATACTACATGCATTTACTActtgatta

Function

NR:

description
PREDICTED: protein canopy homolog 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2293 True 2611 lncRNA 0.47 2 7065125 7068197

Neighbor

gene id symbol gene type direction distance location
dachb dachb,LOC107665972 coding upstream 3125 7029660 ~ 7062000 (+)
pip4p1b tmem55bb,LOC107723169,LOC107665981,LOC107590777,LOC107565103,LOC107721780 coding upstream 57271 7003467 ~ 7007854 (+)
zgc:77880 zgc:77880,LOC107692630,LOC107723165,LOC107758853,LOC107665980,LOC107590776,LOC108439367 coding upstream 62129 6998425 ~ 7002996 (+)
eif3f eif3f,LOC107665937,LOC107723164,LOC107758850 coding upstream 66913 6994966 ~ 6998212 (+)
npy2rl npy2rl,LOC107714138,LOC107692719,LOC107590775,LOC107665946,LOC107758849,LOC108439369 coding upstream 89646 6967526 ~ 6975479 (+)
atp1b1b LOC107723190,LOC107692627,LOC107564268,LOC107665977,LOC107758877,LOC107586865 coding downstream 94111 7162308 ~ 7169347 (+)
LOC122330119 LOC107723198,LOC107692626,LOC107564241,LOC100334711 coding downstream 113048 7181245 ~ 7185282 (+)
knstrn knstrn,LOC107723170,LOC107564216,LOC107758858,LOC107586895 coding downstream 243200 7311397 ~ 7314437 (+)
LOC122350276 eif3b,LOC107692621,LOC107758884,LOC105890332 coding downstream 472206 7540403 ~ 7547680 (+)
si:dkey-26i13.8 si:dkey-26i13.8,LOC107723167,LOC107564186,LOC107665939,LOC107557933,LOC107758843 coding downstream 480154 7548351 ~ 7559412 (+)
LOC122351804 lratb,LOC107665934,LOC107590749,LOC107758869,LOC107714130 non-coding upstream 148428 6912279 ~ 6916697 (+)
LOC122351810 NA non-coding upstream 152860 6911081 ~ 6912265 (+)
LOC122351800 lratb,LOC107714130,LOC107590749,LOC107665934,LOC107758869,LOC108258974 non-coding upstream 154050 6910376 ~ 6911075 (+)
G1405 ugt5b1,LOC107692647,LOC107714140,LOC107564400 non-coding upstream 473870 6583976 ~ 6591255 (+)
G1415 LOC107747400,LOC107719078 non-coding upstream 523594 6539629 ~ 6541531 (+)
G1577 LOC107723159,LOC107723172,LOC107565422,LOC107758837,LOC107590752,LOC107758876 non-coding downstream 67599 7135796 ~ 7143741 (+)
LOC122336506 NA non-coding downstream 250005 7318202 ~ 7321769 (+)
LOC122330513 NA non-coding downstream 332934 7401131 ~ 7408205 (+)
G1677 NA non-coding downstream 445358 7513555 ~ 7582090 (+)
G1706 NA non-coding downstream 530070 7598267 ~ 7606500 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other upstream 204855 6846500 ~ 6860270 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other upstream 219577 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other upstream 282984 6771486 ~ 6782141 (+)
G1414 NA other upstream 528168 6533502 ~ 6536957 (+)
G1318 NA other upstream 777927 6285858 ~ 6287198 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other downstream 78676 7146873 ~ 7152220 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other downstream 652068 7720265 ~ 7721425 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 886514 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 1538628 8606825 ~ 8607785 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other downstream 1554961 8623158 ~ 8634399 (+)

Expression


Co-expression Network