G2038


Basic Information

Item Value
gene id G2038
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8708219 ~ 9014629 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2963
tggtttACCACTTTATAAGAACCCGTGAAAAGCATCAAATTAAAAGATTctggaaaacattttattagatcAAACTAATGCAGACTCAAACTGTGTGTAACGTGTTGTAGTTGTAGTTGTAGTTAACAGCTAGACACAGAAGTATACAAAAGTAGCTTTAATGCAACATTAATCACTGACAAAGACAATGGGTACACTGAATGGATATAAATGTTACGGAAGCAATCAAGGAGAACTGAAACAGGTGGGCAAGCACTCCTGTGGtgactaattaactaataatcaCAAACAAGGAGGGCAAGACCAGGAAAGACCAAATAAAGGCAAGGAACATCACAGTCCAGGGAAGTGAAACTGGGGAGTGTCATGgcacaaaataatgaaagtgctgtatgtaggattgacaATTTGAAATTGTTTGTAATaagtattgcagtccaaattcaaaatattggagactGTTTTTTCACCCGGCCCCTCCTACTCAGACTTGATTCCAATGCATGTTGCCAGATTCCCAATCAGACCCCTTCCATTTGCCAGCTttcatgattaaaatgaaatacgCAGTGTTTTCCGCCAACTGGCATCCCAGGGTTCCGAAACacgattgggtaaactggcagagggcgggtttcacaaaccaagACAGAATCTGACATTCCGAGACTCAACGCTCATTTTCAAATGAGAATAATTGACTGTAGCAAACATATCTgcaatatctgcaaacatagtatttttatgctttagtagagtcgAAATCCTACATATAGCACCTTTAATCCTACCAACCAAAACTTCCATTTATCAAGATCTCTGGAAACAAAAATAGGTCTTAGGGTGTGCTTCCAGTGAAATCCAGAAGAAAAGTCATCTTGTATAAATCAGAAAGAGGTacagattttaaacaaatatgttggtaAGTGTGTATGTTTTACTAGAGGAGAATTATTATGGACTCTAGATTGTGGAGTATTTTAGCTGAAATTGACAGTTTAAAGTTAGAatgtcttgatggatttgtttcttataaatacttaacagcaacaaaaatgtCCAAACCATCATCTAAAGGTTAGTAAAGTCTGTAAActacattttggaaaataattaTCAGTGTTTGAtaccaaatataattaaatacaaatgtcaTTCTCCTTCATTAAATTGCAGTTTTAAACTTGGGATTCTAAGGATAACTagcaaaattgtaaaaaaaaaaaaaattaatatatatatatatatatatatatatattaaatagaattaaaataaaaacaaaaaaattataaattattactaGTCCTGtagtaaatacagtatattagtTAACCATTAGTAattatttggtttggttttgtttcatttggcTGAATGTTTttagaatgtatttaaataaaataaatagtcaaGCTTGTTGTGATCTTCTCTTCAATGCTACAATATTCTGTTAATATGCGAAAGTCAAAAGTACATCAAAAAGTTCACATGTCCATGTCAtcacaaattatttcaaatgatgAACATCACGAATATGGCATTCAAGAGCTTTACTGGACAGAATGTCTAAATCTTGAAAACCTTGAAAAAGGGCATTTCTGCTTCTTTGTTTCACAACATTGCACTCATTTAGCTGAGGGTCATTTGTAAGTGGGTCCTGCATATCAAGAAAAAATCTTTGCAAGAAAATCCATGAGCACTCCATTCAGCATGTTTACCTTTGCACGTTATAGTTTACAAGCCGGCTTTCCAAGCCAGTTTTAGAGAATTTGGCCTTTAAAAGTGTCTGAAATCTTATTTCTTGATGACTTTTATGAGTCTttatctttttccttttctttttcttttgaatatatTCTTGAGCTTTGAAGATTTCTTGCCCTTTTCTTTGCCTCCAGATTCTGAAGAAGATGAATTTACAGATTGACCTTCATTTCCTAGAAGGCTTTGGGAAGAAGAAGACACTGAAGCCGCATGACTGAGATCCCGAGGACCAGGCATGAGAGGGTTCTCGTAGGACTTTTCTAGAATGCCGTCATACACTAGTGTGCTGAGCGAGTCTGAGGCTGGTTTCCAGAGCATCAGGAACTAACGGTGAGGTCTGGCGGGCCAAACTGCACTGGGTTTGCAACCAGAAACTCCTCCTGCGATATCTTGCGCCTTGGAGCCTCCAAAGATAGACCCACCATCTCTCTCTGTATTTTACCAATGGGAGTTTCCAGAGCATCAGGGAACTAACGGTGAGGTCTGGCGGGCCAAACTGCACTGGGTTTGCAACCAGAAAC

Function

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2963 True 2288 lncRNA 0.41 3 8708219 9014629

Neighbor

gene id symbol gene type direction distance location
LOC122351261 NA coding downstream 31604 8673994 ~ 8676615 (-)
wfs1a wfs1a,LOC107565338,LOC107692704,LOC107742510 coding downstream 65722 8634561 ~ 8642497 (-)
pde5aa LOC107692592,LOC107563895 coding downstream 85862 8609088 ~ 8622357 (-)
camk2d2 camk2d2,LOC107714220,LOC107563926,LOC107742503,LOC107702309,LOC107562980,LOC103354871,LOC108246882 coding downstream 109710 8566153 ~ 8598509 (-)
elf2b elf2b,LOC107692595,LOC107702304,LOC107742505,LOC107714223,LOC107562959 coding downstream 218164 8472819 ~ 8490055 (-)
dlc1 dlc1,LOC107742489,LOC107656601,LOC107702327,LOC107562932,LOC107750042,LOC107565476 coding upstream 252906 9267535 ~ 9357022 (-)
LOC122347442 sgcz,LOC107656592,LOC107702328 coding upstream 392531 9407160 ~ 9630558 (-)
fgf20a fgf20a,fgf20,LOC107747399,LOC107721420,LOC107702330,LOC107657011,LOC107562923,LOC106602193 coding upstream 751918 9766547 ~ 9769095 (-)
mtmr7b mtmr7b,LOC107562927,LOC107721424,LOC107656498,LOC107702332,LOC107747392 coding upstream 791685 9806314 ~ 9821101 (-)
asah1b asah1b,asah1,LOC107747389,LOC107721418,LOC107656476,LOC107562924 coding upstream 874115 9888744 ~ 9893057 (-)
G2033 NA non-coding downstream 10818 8695872 ~ 8697401 (-)
G2016 NA non-coding downstream 37415 8669413 ~ 8670804 (-)
G2010 NA non-coding downstream 73822 8631464 ~ 8634397 (-)
LOC122351284 NA non-coding downstream 259595 8446548 ~ 8448624 (-)
G1868 NA non-coding downstream 540832 8138483 ~ 8167387 (-)
G2138 NA non-coding upstream 665267 9679896 ~ 9693438 (-)
G2174 LOC107747394,LOC107562929,LOC107721426 non-coding upstream 772685 9787314 ~ 9792467 (-)
G2286 NA non-coding upstream 1242021 10256650 ~ 10256887 (-)
G2292 fat1,fat1a,LOC107562748 non-coding upstream 1292341 10306970 ~ 10307238 (-)
G2293 NA non-coding upstream 1292875 10307504 ~ 10307715 (-)
G1926 NA other downstream 100424 8556040 ~ 8607795 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other downstream 208007 8492144 ~ 8500212 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 1412390 7204004 ~ 7295829 (-)
G1642 NA other downstream 1538197 7125642 ~ 7170022 (-)
trpc5a trpc5a,LOC107564287,LOC107692628,LOC107758875,LOC107590730,LOC108439362 other downstream 1573937 7071589 ~ 7134282 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 1342552 10357181 ~ 10401686 (-)
LOC122347930 dnah6,LOC106610484 other upstream 1720341 10734970 ~ 10799609 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other upstream 1791940 10806569 ~ 10814075 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other upstream 1939246 10953875 ~ 10981366 (-)
G2401 NA other upstream 2038525 11053154 ~ 11053941 (-)

Expression


Co-expression Network