LOC122327253


Basic Information

Item Value
gene id LOC122327253
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1439040 ~ 1441666 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU309
CGCTGAATAAATAGAAAAGGCTCGAGCGGAGTTTAAAGCTGGACAGATTCGCCTTCATTCTGCAGAATAAATCGCCATCATGATCAACTGGAAGGCTCTGGATAACGTGCCGGTGTTGCTCTACATCCTGGCTCTGAAGACGCTCTTGCTGTGTCTGGCGTTTGCGGGAACGAAGCTCTACCAGAGCAAGAAAGCAGAAGCGGCTCTGAAACGGCAGATGGAGATGAAGAGGAAACTCGCCCAACAGACGCAGGAGCTCATCGATAACAAGAAGGACGACTGACGTGAAGAACGGGTGAAGAACGGGTGAAGAACGGGTGAAGAACGGGTGAAGAACGGGTGAAGAACGAGACGGACGAGCGGCTCTGTGTTTCTGGTGCAGATGTTGAAGCCAAAGCCTCGACGACGCGGACTTGCTTTTTATACaccgtttttatttattatctctga
>TU310
CGCTGAATAAATAGAAAAGGCTCGAGCGGAGTTTAAAGCTGGACAGATTCGCCTTCATTCTGCAGAATAAATCGCCATCATGATCAACTGGAAGGCTCTGGATAACGTGCCGGTGTTGCTCTACATCCTGGCTCTGAAGACGCTCTTGCTGTGTCTGGCGTTTGCGGGAACGAAGCTCTACCAGAGCAAGAAAGCAGAAGCGGCTCTGAAACGGCAGATGGAGATGAAGAGGAAACTCGCCCAACAGACGCAGGAGCTCATCGATAACAAGAAGGACGACTGACGTGAAGAACGGGTGAAGAACGGGTGAAGAACGAGACGGACGAGCGGCTCTGTGTTTCTGGTGCAGATGTTGAAGCCAAAGCCTCGACGACGCGGACTTGCTTTTTATACaccgtttttatttattatctctga
>TU311
CGCTGAATAAATAGAAAAGGCTCGAGCGGAGTTTAAAGCTGGACAGATTCGCCTTCATTCTGCAGAATAAATCGCCATCATGATCAACTGGAAGGCTCTGGATAACGTGCCGGTGTTGCTCTACATCCTGGCTCTGAAGACGCTCTTGCTGTGTCTGGCGTTTGCGGGAACGAAGCTCTACCAGAGCAAGAAAGCAGAAGCGGCTCTGAAACGGCAGATGGAGATGAAGAGGAAACTCGCCCAACAGACGCAGGAGCTCATCGATAACAAGAAGGACGACTGACGTGAAGAACGGGTGAAGAACGGGTGAAGAACGAGACGGACGAGCGGCTCTGTGTTTCTGGTGCAGATGTTGAAGCCAAAGCCTCGACGACGCGGACTTGCTTTTTATACaccgtttttatttattatctctgacgtttgtaaataaaaatgtttttctatctGTATGAATTCTTCTGGTTCCTGTGCTGTATCGTGTTACATGAGGAGCTCGGAGCGAGCAGCAGGGGACGCTGTCCAGAGCCCAGAGACGTGAAACACGAGCAGGACAAGGTTACATCGACCTGTTAACCAATACCTCGCTGCTTTCTGGAAAAGAGCATGCTATAAATGACACCTGATACAGAGGAAACATGCTTTAA
>XM_043222498.1
GTCACGCCCCCAGAGGTCACTTACTGACCCATGCGCTGAATAAATAGAAAAGGCTCGAGCGGAGTTTAAAGCTGGACAGATTCGCCTTCATTCTGCAGAATAAATCGCCATCATGATCAACTGGAAGGCTCTGGATAACGTGCCGGTGTTGCTCTACATCCTGGCTCTGAAGACGCTCTTGCTGTGTCTGGCGTTTGCGGGAACGAAGCTCTACCAGAGCAAGAAAGCAGAAGCGGCTCTGAAACGGCAGATGGAGATGAAGAGGAAACTCGCCCAACAGACGCAGGAGCTCATCGATAACAAGAAGGACGACTGACGTGAAGAACGGGTGAAGAACGGGTGAAGAACGGGTGAAGAACGGGTGAAGAACGGGTGAAGAACGAGACGGACGAGCGGCTCTGTGTTTCTGGTGCAGATGTTGAAGCCAAAGCCTCGACGACGCGGACTTGCTTTTTATACaccgtttttatttattatctctgacgtttgtaaataaaaatgtttttctatctGTA
>XM_043222583.1
GTCACGCCCCCAGAGGTCACTTACTGACCCATGCGCTGAATAAATAGAAAAGGCTCGAGCGGAGTTTAAAGCTGGACAGATTCGCCTTCATTCTGCAGAATAAATCGCCATCATGATCAACTGGAAGGCTCTGGATAACGTGCCGGTGTTGCTCTACATCCTGGCTCTGAAGACGCTCTTGCTGTGTCTGGCGTTTGCGGGAACGAAGCTCTACCAGAGCAAGAAAGCAGAAGCGGCTCTGAAACGGCAGATGGAGATGAAGAGGAAACTCGCCCAACAGACGCAGGAGCTCATCGATAACAAGAAGGACGACTGACGTGAAGAACGGGTGAAGAACGGGTGAAGAACGAGACGGACGAGCGGCTCTGTGTTTCTGGTGCAGATGTTGAAGCCAAAGCCTCGACGACGCGGACTTGCTTTTTATACaccgtttttatttattatctctgacgtttgtaaataaaaatgtttttctatctGTA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU309 False 450 TUCP 0.34 2 1439073 1441439
TU310 False 417 TUCP 0.39 3 1439073 1441439
TU311 True 644 TUCP 0.45 3 1439073 1441666
XM_043222498.1 False 515 mRNA 0.49 2 1439040 1441471
XM_043222583.1 False 482 mRNA 0.49 3 1439040 1441471

Neighbor

gene id symbol gene type direction distance location
LOC122350806 NA coding upstream 92247 1334924 ~ 1346793 (+)
LOC122351641 NA coding upstream 107491 1328385 ~ 1331549 (+)
LOC122347468 LOC107653668,LOC107730391,LOC107746981,LOC107559791,LOC107677846,LOC107555244,LOC107730385 coding upstream 177072 1246693 ~ 1261968 (+)
LOC122347479 LOC107730391,LOC107653668,LOC107677846,LOC107555244,LOC107746981,LOC107559791 coding upstream 188706 1245163 ~ 1250334 (+)
LOC122341978 NA coding upstream 391229 1043183 ~ 1047811 (+)
LOC122348945 LOC107718016,LOC107555266,LOC107568777,LOC107709315,LOC106575573,LOC108429863,LOC105889574 coding downstream 14420 1456086 ~ 1465285 (+)
runx1 runx1,LOC107555250,LOC107698911,LOC108429862,LOC107653683,LOC107571884 coding downstream 83441 1525107 ~ 1570888 (+)
LOC122347221 LOC107751081,LOC107698893,LOC107555241 coding downstream 132952 1574618 ~ 1583412 (+)
LOC122343461 NA coding downstream 142946 1584612 ~ 1591930 (+)
zgc:152904 zgc:152904,ncam2,LOC107698913,LOC107751079,LOC107721821 coding downstream 270376 1712042 ~ 1893196 (+)
LOC122350990 NA non-coding upstream 36425 1357834 ~ 1402615 (+)
G203 atp1a1a.1,LOC107718011,LOC107698904,LOC107555257,LOC107653678,LOC107717912,LOC105923069 non-coding upstream 40066 1396899 ~ 1398974 (+)
G217 NA non-coding upstream 55010 1383753 ~ 1384030 (+)
G207 NA non-coding upstream 102695 1329595 ~ 1336345 (+)
G175 NA non-coding upstream 220306 1218065 ~ 1218734 (+)
G227 NA non-coding downstream 25819 1467485 ~ 1468131 (+)
G270 NA non-coding downstream 43480 1485146 ~ 1485643 (+)
G273 LOC107698895,LOC107555251,LOC107751082 non-coding downstream 99656 1541322 ~ 1611176 (+)
G312 NA non-coding downstream 463986 1905652 ~ 1905963 (+)
G318 NA non-coding downstream 488991 1930657 ~ 1991767 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other upstream 318319 1119719 ~ 1120721 (+)
LOC122341994 NA other upstream 989400 445940 ~ 449640 (+)
G10 NA other upstream 1260840 177716 ~ 178200 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other downstream 744155 2185821 ~ 2192464 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 1041974 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 1051906 2493572 ~ 2558527 (+)
pcid2 pcid2 other downstream 1069906 2511572 ~ 2518385 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other downstream 1082859 2524525 ~ 2527244 (+)

Expression


Co-expression Network