G260


Basic Information

Item Value
gene id G260
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1441088 ~ 1441512 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU386
CCTCATGTAACACGATACAGCACAGGAACCAGAAGAATTCATACagatagaaaaacatttttatttacaaacgtcagagataataaataaaaacggtGTATAAAAAGCAAGTCCGCGTCGTCGAGGCTTTGGCTTCAACATCTGCACCAGAAACACAGAGCCGCTCGTCCGTCTCGTTCTTCACCCGTTCTTCACCCGTTCTTCACGTCAGTCGTCCTTCTTGTTATCGATGAGCTCCTGCGTCTGTTGGGCGAGTTTCCTCTTCATCTCCATCTGCCGTTTCAGAGCCGCTTCTGCTTTCTTGCTCTGGTAGAGCTTCGTTCCCGCAAACGCCAGACACAGCAAGAGCGTCTTCAGAGCCAGGATGTAGAGCAACACCGGCACGTTATCCA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU386 True 392 lncRNA 0.47 2 1441088 1441512

Neighbor

gene id symbol gene type direction distance location
LOC122350642 atp1a1a.4,LOC107717913,LOC107653679,LOC107555265,LOC108429865 coding downstream 28142 1404578 ~ 1412946 (-)
atp1a1a.1 atp1a1a.1,LOC107718011,LOC107555257,LOC107698904,LOC107653678,LOC107717912,LOC107568774 coding downstream 38264 1392929 ~ 1402824 (-)
LOC122350536 atp1a1a.2,atp1a1a.4,atp1a1a.3,LOC107698906,LOC107555259,LOC107717913,LOC107555265,LOC107653679 coding downstream 70101 1364542 ~ 1370987 (-)
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding downstream 87292 1347494 ~ 1353796 (-)
si:ch211-132g1.6 NA coding downstream 107264 1331683 ~ 1333824 (-)
rcan1b rcan1b,LOC107555267,LOC107698909,LOC107568778,LOC107653682,LOC107718018,LOC107709340 coding upstream 1279 1442791 ~ 1455071 (-)
urp2 LOC107698908 coding upstream 23925 1465437 ~ 1469101 (-)
wu:fa56d06 LOC107555251,LOC107751082 coding upstream 164364 1605876 ~ 1612082 (-)
n6amt1 n6amt1,LOC107563652,LOC107727005,LOC107698915,LOC107689945,LOC107751077 coding upstream 520802 1962314 ~ 1968862 (-)
LOC122342174 adamts5,LOC107751075,LOC107593743 coding upstream 710139 2151651 ~ 2155943 (-)
G247 NA non-coding downstream 94299 1344298 ~ 1346789 (-)
G244 NA non-coding downstream 156279 1282838 ~ 1284809 (-)
LOC122347488 NA non-coding downstream 177885 1256189 ~ 1263203 (-)
G231 NA non-coding downstream 467119 973746 ~ 973969 (-)
G125 NA non-coding downstream 550501 890244 ~ 890587 (-)
G297 NA non-coding upstream 125526 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 139231 1580743 ~ 1582087 (-)
G304 NA non-coding upstream 142379 1583891 ~ 1584684 (-)
G347 NA non-coding upstream 341683 1783195 ~ 1784512 (-)
G358 NA non-coding upstream 425128 1866640 ~ 1867365 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 209441 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 692724 738137 ~ 748364 (-)
G67 NA other downstream 1004963 435808 ~ 436125 (-)
G20 NA other downstream 1254003 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 150557 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1247253 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1694996 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2566328 4007840 ~ 4014287 (-)
G820 NA other upstream 2856798 4298310 ~ 4299193 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G407475 NA non-coding CI01000299 null 4704124 ~ 4704801 (-)