Fish Transcriptome and Expression Database

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ornamental fish

G18

Basic Information

Item	Value
gene id	G18
gene name	NA
gene type	non-coding
species	tiger barb (Puntius tetrazona)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NC_056699.1
NCBI id	CM032068.1
chromosome length	31761587
location	166097 ~ 166327 (-)
genome version	ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45
tacagttttcttgaAGTCCTGGGCcgacaaactcaacccattattataacacttttatgggcatgatcttggccaggttaagtgtgacttctcgtaggctttcccattcgaccatggtaaccctggaagaaaattttaaaaattcaaaacctaaatccagacatcctggCACTTCAACCAGGCgttattggccggtttaagtgcaacttctcggacgcttttccacccgac

Function

GO:

id	name	namespace
GO:0007507	heart development	biological_process
GO:0008015	blood circulation	biological_process
GO:0003013	circulatory system process	biological_process

KEGG:

id	description
ko04260	Cardiac muscle contraction
ko04261	Adrenergic signaling in cardiomyocytes
ko05410	Hypertrophic cardiomyopathy
ko05414	Dilated cardiomyopathy

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU45	True	231	lncRNA	0.36	1	166097	166327

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
prpf4bb	prpf4bb,LOC107738454,LOC107749644,LOC107598186,LOC107670278,LOC107554722,LOC108442973	coding	upstream	26884	193211 ~ 205559 (-)
gli3	LOC107749627,LOC107747788,LOC107554716,LOC107598194,LOC107694915,LOC107694564	coding	upstream	44396	210723 ~ 361603 (-)
ccr9b	ccr9b,LOC107598203,LOC107749654,LOC107675310,LOC107726711,LOC107703604	coding	upstream	238355	404682 ~ 408086 (-)
lztfl1	lztfl1,LOC107701792,LOC107675311	coding	upstream	256573	422900 ~ 433678 (-)
trnag-gcc	NA	coding	upstream	272727	439054 ~ 439128 (-)
G6	LOC107683095,LOC107600734,LOC107716905	non-coding	downstream	113509	52167 ~ 52588 (-)
G5	NA	non-coding	downstream	117570	47787 ~ 48527 (-)
G19	NA	non-coding	upstream	11349	177676 ~ 178201 (-)
G50	NA	non-coding	upstream	52252	218579 ~ 221074 (-)
G51	NA	non-coding	upstream	52602	218929 ~ 221328 (-)
G56	NA	non-coding	upstream	226972	393299 ~ 393852 (-)
G66	NA	non-coding	upstream	255805	422132 ~ 422409 (-)
G20	NA	other	upstream	20093	186420 ~ 187085 (-)
G67	NA	other	upstream	269481	435808 ~ 436125 (-)
LOC122342053	trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752	other	upstream	571810	738137 ~ 748364 (-)
mbnl2	mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253	other	upstream	909861	1076188 ~ 1231647 (-)
LOC122343438	son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080	other	upstream	1425742	1592069 ~ 1604984 (-)

Expression

Co-expression Network