scoca (scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533)


Basic Information

Item Value
gene id scoca
gene name scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19715553 ~ 19777050 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU6498
GTATCgagagcgtgtgtgagagagaaacagagaagcGATGAGGTAACGGATGTTCTGTATCATTACCTTGACATCAGCTTTGGAGGCTTAATAATTTTGAACATCTTTAATAACGCGGATTGATTTAGACTTGTATCAGCTGACGGAGAACAGAGAGCCCTGCGCTTCAGACCAGAGGACCAGTGTAACGTTAGCACCATGAACTGTGAAATTGATGGAGATATGGAGAATCAAGTTGAGCAAGAGGAGAAGACGAGACTCATAAACCAAGTGTTGGAGCTTCAGCACACACTTGAAGATCTCTCTGCGCGTGTGGACGCGGTGAAAGAGGAGAACCTTAAGCTTAAATCGGAGAACCAGGTTCTCGGTCAGTACATCGAGAACCTCATGTCTGCGTCCAGCGTGTTTCAGACCACCGACACCAAAAGCAAACGGAAATAACATGTGGATCACTTCTACTTCATCTATCGTCTACTCTTTCCGGCATTCAAGCTCATACATATAAGCcgctgtttgttttgtatttatttcgtTGTACAATTTACCAATGCATCTCTCAGCATGGTTTGGGTAATACTTGAATGGACTGAGCTGCTGCCTTTCCTGTCAGCTAACTGTGTTACAAGATATTACAGGATGCATGACGTAGTCTGTGATCAGATAAGTACAGAGCTGGTGTAATACCACTCCTGTATAACTCATTTAGCAGGTACATAATCAATCTCAGACCCTCTCATCGACTTCACGACCTTTTTAAACAGTAGCCAAAGTCAGGTTCTCTTAAAAATAGTTATGCTGAATTTCAGCTTTTGGCTTTCCACTGCTAGCATTAACAACGTACAGCAAGATTGAACACGGATACGTTCTCTTGAAAGTGCATGACATCTCATAACGGAAGTGCATGATGTAGAAGGCTAAGGATGGATAACCTAAAGTAGTCCTCCCTCACTTGGCATGTGATTTGTCCTGTTTAAACCAAGGTTACTGGCAATTATCTTAATGACAGTTGCTCAGCTGTTGCAGAAAGTATGCAATTTCCTGACCCACTGGTTTAAGCAAAGTACCTCCTCgtgtattacattataaaagGCCTTTGACTCACCAAATGacatttactcactttcataCTTGGATTTATCTTAAAAGGTCCGACTAGCGCACAAACCCAATGTCTTTTAAGCAGGATCAATCGATTGAAACCGGCTCGCAGTGCAAACTGCAGCATTGTGTTGGAGAGTTTGCTCTTCGTGGTCATGTCCTTTGGATTGAGGGACTTAAAATGGATGAAATAAATGGATTTTAGTGTTTACTGCTTTCAAAGACTGAAGCGAGGTTGAGTCTGTGAGTGATATTGATCTGATTGCTCTAAAGTGTCTGCTTGAGCGGCATTTATGAGGACAGATGCTCTGCTCTTTGCTCAGAGTTTGCTGATGTGAGATTTCACTTACTATGAATTATTGACGTGACATTGAAGCATCTGCCACAACGCTACATactcaatttttttaatatttttgtgaaaaatttgATTTGTGTAATTTATGTTTGCAAGCACCTGATGTAAAGTACTGCCTGTTCTgaaagtgtacattttattttgttacaattACGCCTTTAATAAAATGCCTTT
>TU6499
GTATCgagagcgtgtgtgagagagaaacagagaagcGATGAGCTGACGGAGAACAGAGAGCCCTGCGCTTCAGACCAGAGGACCAGTGTAACGTTAGCACCATGAACTGTGAAATTGATGGAGATATGGAGAATCAAGTTGAGCAAGAGGAGAAGACGAGACTCATAAACCAAGTGTTGGAGCTTCAGCACACACTTGAAGATCTCTCTGCGCGTGTGGACGCGGTGAAAGAGGAGAACCTTAAGCTTAAATCGGAGAACCAGGTTCTCGGTCAGTACATCGAGAACCTCATGTCTGCGTCCAGCGTGTTTCAGACCACCGACACCAAAAGCAAACGGAAATAACATGTGGATCACTTCTACTTCATCTATCGTCTACTCTTTCCGGCATTCAAGCTCATACATATAAGCcgctgtttgttttgtatttatttcgtTGTACAATTTACCAATGCATCTCTCAGCATGGTTTGGGTAATACTTGAATGGACTGAGCTGCTGCCTTTCCTGTCAGCTAACTGTGTTACAAGATATTACAGGATGCATGACGTAGTCTGTGATCAGATAAGTACAGAGCTGGTGTAATACCACTCCTGTATAACTCATTTAGCAGGTACATAATCAATCTCAGACCCTCTCATCGACTTCACGACCTTTTTAAACAGTAGCCAAAGTCAGGTTCTCTTAAAAATAGTTATGCTGAATTTCAGCTTTTGGCTTTCCACTGCTAGCATTAACAACGTACAGCAAGATTGAACACGGATACGTTCTCTTGAAAGTGCATGACATCTCATAACGGAAGTGCATGATGTAGAAGGCTAAGGATGGATAACCTAAAGTAGTCCTCCCTCACTTGGCATGTGATTTGTCCTGTTTAAACCAAGGTTACTGGCAATTATCTTAATGACAGTTGCTCAGCTGTTGCAGAAAGTATGCAATTTCCTGACCCACTGGTTTAAGCAAAGTACCTCCTCgtgtattacattataaaagGCCTTTGACTCACCAAATGacatttactcactttcataCTTGGATTTATCTTAAAAGGTCCGACTAGCGCACAAACCCAATGTCTTTTAAGCAGGATCAATCGATTGAAACCGGCTCGCAGTGCAAACTGCAGCATTGTGTTGGAGAGTTTGCTCTTCGTGGTCATGTCCTTTGGATTGAGGGACTTAAAATGGATGAAATAAATGGATTTTAGTGTTTACTGCTTTCAAAGACTGAAGCGAGGTTGAGTCTGTGAGTGATATTGATCTGATTGCTCTAAAGTGTCTGCTTGAGCGGCATTTATGAGGACAGATGCTCTGCTCTTTGCTCAGAGTTTGCTGATGTGAGATTTCACTTACTATGAATTATTGACGTGACATTGAAGCATCTGCCACAACGCTACATactcaatttttttaatatttttgtgaaaaatttgATTTGTGTAATTTATGTTTGCAAGCACCTGATGTAAAGTACTGCCTGTTCTgaaagtgtacattttattttgttacaattACGCCTTTAATAAAATGCCTTT
>TU6501
agacagagagagagagagagagagagagagcgtgtgtgagagagaaacagagaagcGATGAGCTGACGGAGAACAGAGAGCCCTGCGCTTCAGACCAGAGGACCAGTGTAACGTTAGCACCATGAACTGTGAAATTGATGGAGATATGGAGAATCAAGTTGAGCAAGAGGAGAAGACGAGACTCATAAACCAAGTGTTGGAGCTTCAGCACACACTTGAAGATCTCTCTGCGCGTGTGGACGCGGTGAAAGAGGAGAACCTTAAGCTTAAATCGGAGAACCAGGTTCTCGGTCAGTACATCGAGAACCTCATGTCTGCGTCCAGCGTGTTTCAGACCACCGACACCAAAAGCAAACGGAAATAACATGTGGATCACTTCTACTTCATCTATCGTCTACTCTTTCCGGCATTCAAGCTCATACATATAAGCcgctgtttgttttgtatttatttcgtTGTACAATTTACCAATGCATCTCTCAGCATGGTTTGGGTAATACTTGAATGGACTGAGCTGCTGCCTTTCCTGTCAGCTAACTGTGTTACAAGATATTACAGGATGCATGACGTAGTCTGTGATCAGATAAGTACAGAGCTGGTGTAATACCACTCCTGTATAACTCATTTAGCAGGTACATAATCAATCTCAGACCCTCTCATCGACTTCACGACCTTTTTAAACAGTAGCCAAAGTCAGGTTCTCTTAAAAATAGTTATGCTGAATTTCAGCTTTTGGCTTTCCACTGCTAGCATTAACAACGTACAGCAAGATTGAACACGGATACGTTCTCTTGAAAGTGCATGACATCTCATAACGGAAGTGCATGATGTAGAAGGCTAAGGATGGATAACCTAAAGTAGTCCTCCCTCACTTGGCATGTGATTTGTCCTGTTTAAACCAAGGTTACTGGCAATTATCTTAATGACAGTTGCTCAGCTGTTGCAGAAAGTATGCAATTTCCTGACCCACTGGTTTAAGCAAAGTACCTCCTCgtgtattacattataaaagGCCTTTGACTCACCAAATGacatttactcactttcataCTTGGATTTATCTTAAAAGGTCCGACTAGCGCACAAACCCAATGTCTTTTAAGCAGGATCAATCGATTGAAACCGGCTCGCAGTGCAAACTGCAGCATTGTGTTGGAGAGTTTGCTCTTCGTGGTCATGTCCTTTGGATTGAGGGACTTAAAATGGATGAAATAAATGGATTTTAGTGTTTACTGCTTTCAAAGACTGAAGCGAGGTTGAGTCTGTGAGTGATATTGATCTGATTGCTCTAAAGTGTCTGCTTGAGCGGCATTTATGAGGACAGATGCTCTGCTCTTTGCTCAGAGTTTGCTGATGTGAGATTTCACTTACTATGAATTATTGACGTGACATTGAAGCATCTGCCACAACGCTACATactcaatttttttaatatttttgtgaaaaatttgATTTGTGTAATTTATGTTTGCAAGCACCTGATGTAAAGTACTGCCTGTTCTgaaagtgtacattttattttgttacaattACGCCTTTAATAAAATGCCTTT
>TU6502
GTATCgagagcgtgtgtgagagagaaacagagaagcGATGAGGTAACGGATGTTCTGTATCATTACCTTGACATCAGCTTTGGAGGCTTAATAATTTTGAACATCTTTAATAACGCGGATTGATTTAGACTTGTATCAGCTGACGGAGAACAGAGAGCCCTGCGCTTCAGACCAGAGGACCAGTGTAACGTTAGCACCATGAACTGTGAAATTGATGGAGATATGGAGAATCAAGTTGAGCAAGAGGAGAAGACGAGACTCATAAACCAAGTGTTGGAGCTTCAGCACACACTTGAAGGTTTAAAAGTCTTTGAGTGTACAGCTGTATTAGTGGTTAACCgtcactgttttgttttgtaacagAATATACACCCCgtcatgtttctgtttttcctctAACCATTTTCCTCTGATCCACTCAGGCTCTCTAAATGGCTGCCGGAAAAAGCACTCTAATGTATTTTGTCTGTTTCCATTAGATCTCTCTGCGCGTGTGGACGCGGTGAAAGAGGAGAACCTTAAGCTTAAATCGGAGAACCAGGTTCTCGGTCAGTACATCGAGAACCTCATGTCTGCGTCCAGCGTGTTTCAGACCACCGACACCAAAAGCAAACGGAAATAACATGTGGATCACTTCTACTTCATCTATCGTCTACTCTTTCCGGCATTCAAGCTCATACATATAAGCcgctgtttgttttgtatttatttcgtTGTACAATTTACCAATGCATCTCTCAGCATGGTTTGGGTAATACTTGAATGGACTGAGCTGCTGCCTTTCCTGTCAGCTAACTGTGTTACAAGATATTACAGGATGCATGACGTAGTCTGTGATCAGATAAGTACAGAGCTGGTGTAATACCACTCCTGTATAACTCATTTAGCAGGTACATAATCAATCTCAGACCCTCTCATCGACTTCACGACCTTTTTAAACAGTAGCCAAAGTCAGGTTCTCTTAAAAATAGTTATGCTGAATTTCAGCTTTTGGCTTTCCACTGCTAGCATTAACAACGTACAGCAAGATTGAACACGGATACGTTCTCTTGAAAGTGCATGACATCTCATAACGGAAGTGCATGATGTAGAAGGCTAAGGATGGATAACCTAAAGTAGTCCTCCCTCACTTGGCATGTGATTTGTCCTGTTTAAACCAAGGTTACTGGCAATTATCTTAATGACAGTTGCTCAGCTGTTGCAGAAAGTATGCAATTTCCTGACCCACTGGTTTAAGCAAAGTACCTCCTCgtgtattacattataaaagGCCTTTGACTCACCAAATGacatttactcactttcataCTTGGATTTATCTTAAAAGGTCCGACTAGCGCACAAACCCAATGTCTTTTAAGCAGGATCAATCGATTGAAACCGGCTCGCAGTGCAAACTGCAGCATTGTGTTGGAGAGTTTGCTCTTCGTGGTCATGTCCTTTGGATTGAGGGACTTAAAATGGATGAAATAAATGGATTTTAGTGTTTACTGCTTTCAAAGACTGAAGCGAGGTTGAGTCTGTGAGTGATATTGATCTGATTGCTCTAAAGTGTCTGCTTGAGCGGCATTTATGAGGACAGATGCTCTGCTCTTTGCTCAGAGTTTGCTGATGTGAGATTTCACTTACTATGAATTATTGACGTGACATTGAAGCATCTGCCACAACGCTACATactcaatttttttaatatttttgtgaaaaatttgATTTGTGTAATTTATGTTTGCAAGCACCTGATGTAAAGTACTGCCTGTTCTgaaagtgtacattttattttgttacaattACGCCTTTAATAAAATGCCTTT
>XM_043251365.1
ACCGTGGTGATGGTGAATAATTGAGAGGGTAAGGCCGGACGAACTACACACAGCCTTTCAGGAAGAAAGAGCTAGATAAAGACAACAGGACCTTTTCAAAGGCATTTAACCGTTGTTTTGCTCGCAAGCTACACTCGCATTTGCAAAGGCTCTCGGTTATGGAGGGAGACGTTGATGAGGATGATGGGACCTTTACTAACATTTCGCTAGCTGATGATTCAGCTGACGGAGAACAGAGAGCCCTGCGCTTCAGACCAGAGGACCAGTGTAACGTTAGCACCATGAACTGTGAAATTGATGGAGATATGGAGAATCAAGTTGAGCAAGAGGAGAAGACGAGACTCATAAACCAAGTGTTGGAGCTTCAGCACACACTTGAAGATCTCTCTGCGCGTGTGGACGCGGTGAAAGAGGAGAACCTTAAGCTTAAATCGGAGAACCAGGTTCTCGGTCAGTACATCGAGAACCTCATGTCTGCGTCCAGCGTGTTTCAGACCACCGACACCAAAAGCAAACGGAAATAACATGTGGATCACTTCTACTTCATCTATCGTCTACTCTTTCCGGCATTCAAGCTCATACATATAAGCcgctgtttgttttgtatttatttcgtTGTACAATTTACCAATGCATCTCTCAGCATGGTTTGGGTAATACTTGAATGGACTGAGCTGCTGCCTTTCCTGTCAGCTAACTGTGTTACAAGATATTACAGGATGCATGACGTAGTCTGTGATCAGATAAGTACAGAGCTGGTGTAATACCACTCCTGTATAACTCATTTAGCAGGTACATAATCAATCTCAGACCCTCTCATCGACTTCACGACCTTTTTAAACAGTAGCCAAAGTCAGGTTCTCTTAAAAATAGTTATGCTGAATTTCAGCTTTTGGCTTTCCACTGCTAGCATTAACAACGTACAGCAAGATTGAACACGGATACGTTCTCTTGAAAGTGCATGACATCTCATAACGGAAGTGCATGATGTAGAAGGCTAAGGATGGATAACCTAAAGTAGTCCTCCCTCACTTGGCATGTGATTTGTCCTGTTTAAACCAAGGTTACTGGCAATTATCTTAATGACAGTTGCTCAGCTGTTGCAGAAAGTATGCAATTTCCTGACCCACTGGTTTAAGCAAAGTACCTCCTCgtgtattacattataaaagGCCTTTGACTCACCAAATGacatttactcactttcataCTTGGATTTATCTTAAAAGGTCCGACTAGCGCACAAACCCAATGTCTTTTAAGCAGGATCAATCGATTGAAACCGGCTCGCAGTGCAAACTGCAGCATTGTGTTGGAGAGTTTGCTCTTCGTGGTCATGTCCTTTGGATTGAGGGACTTAAAATGGATGAAATAAATGGATTTTAGTGTTTACTGCTTTCAAAGACTGAAGCGAGGTTGAGTCTGTGAGTGATATTGATCTGATTGCTCTAAAGTGTCTGCTTGAGCGGCATTTATGAGGACAGATGCTCTGCTCTTTGCTCAGAGTTTGCTGATGTGAGATTTCACTTACTATGAATTATTGACGTGACATTGAAGCATCTGCCACAACGCTACATactcaatttttttaatatttttgtgaaaaatttgATTTGTGTAATTTATGTTTGCAAGCACCTGATGTAAAGTACTGCCTGTTCTgaaagtgtacattttattttgttacaattACGCCTTTAATAAAATGCCTTTGCACAAA
>XM_043251373.1
CGGTACTTTTCGGTATCgagagcgtgtgtgagagagaaacagagaagcGATGAGGTAACGGATGTTCTGTATCATTACCTTGACATCAGCTTTGGAGGCTTAATAATTTTGAACATCTTTAATAACGCGGATTGATTTAGACTTGTATCAGCTGACGGAGAACAGAGAGCCCTGCGCTTCAGACCAGAGGACCAGTGTAACGTTAGCACCATGAACTGTGAAATTGATGGAGATATGGAGAATCAAGTTGAGCAAGAGGAGAAGACGAGACTCATAAACCAAGTGTTGGAGCTTCAGCACACACTTGAAGATCTCTCTGCGCGTGTGGACGCGGTGAAAGAGGAGAACCTTAAGCTTAAATCGGAGAACCAGGTTCTCGGTCAGTACATCGAGAACCTCATGTCTGCGTCCAGCGTGTTTCAGACCACCGACACCAAAAGCAAACGGAAATAACATGTGGATCACTTCTACTTCATCTATCGTCTACTCTTTCCGGCATTCAAGCTCATACATATAAGCcgctgtttgttttgtatttatttcgtTGTACAATTTACCAATGCATCTCTCAGCATGGTTTGGGTAATACTTGAATGGACTGAGCTGCTGCCTTTCCTGTCAGCTAACTGTGTTACAAGATATTACAGGATGCATGACGTAGTCTGTGATCAGATAAGTACAGAGCTGGTGTAATACCACTCCTGTATAACTCATTTAGCAGGTACATAATCAATCTCAGACCCTCTCATCGACTTCACGACCTTTTTAAACAGTAGCCAAAGTCAGGTTCTCTTAAAAATAGTTATGCTGAATTTCAGCTTTTGGCTTTCCACTGCTAGCATTAACAACGTACAGCAAGATTGAACACGGATACGTTCTCTTGAAAGTGCATGACATCTCATAACGGAAGTGCATGATGTAGAAGGCTAAGGATGGATAACCTAAAGTAGTCCTCCCTCACTTGGCATGTGATTTGTCCTGTTTAAACCAAGGTTACTGGCAATTATCTTAATGACAGTTGCTCAGCTGTTGCAGAAAGTATGCAATTTCCTGACCCACTGGTTTAAGCAAAGTACCTCCTCgtgtattacattataaaagGCCTTTGACTCACCAAATGacatttactcactttcataCTTGGATTTATCTTAAAAGGTCCGACTAGCGCACAAACCCAATGTCTTTTAAGCAGGATCAATCGATTGAAACCGGCTCGCAGTGCAAACTGCAGCATTGTGTTGGAGAGTTTGCTCTTCGTGGTCATGTCCTTTGGATTGAGGGACTTAAAATGGATGAAATAAATGGATTTTAGTGTTTACTGCTTTCAAAGACTGAAGCGAGGTTGAGTCTGTGAGTGATATTGATCTGATTGCTCTAAAGTGTCTGCTTGAGCGGCATTTATGAGGACAGATGCTCTGCTCTTTGCTCAGAGTTTGCTGATGTGAGATTTCACTTACTATGAATTATTGACGTGACATTGAAGCATCTGCCACAACGCTACATactcaatttttttaatatttttgtgaaaaatttgATTTGTGTAATTTATGTTTGCAAGCACCTGATGTAAAGTACTGCCTGTTCTgaaagtgtacattttattttgttacaattACGCCTTTAATAAAATGCCTTTGCACAAA
>XM_043251382.1
TTGTCTCCCTCTGTCGGTACTTTTCGGTATCgagagcgtgtgtgagagagaaacagagaagcGATGAGCTGACGGAGAACAGAGAGCCCTGCGCTTCAGACCAGAGGACCAGTGTAACGTTAGCACCATGAACTGTGAAATTGATGGAGATATGGAGAATCAAGTTGAGCAAGAGGAGAAGACGAGACTCATAAACCAAGTGTTGGAGCTTCAGCACACACTTGAAGATCTCTCTGCGCGTGTGGACGCGGTGAAAGAGGAGAACCTTAAGCTTAAATCGGAGAACCAGGTTCTCGGTCAGTACATCGAGAACCTCATGTCTGCGTCCAGCGTGTTTCAGACCACCGACACCAAAAGCAAACGGAAATAACATGTGGATCACTTCTACTTCATCTATCGTCTACTCTTTCCGGCATTCAAGCTCATACATATAAGCcgctgtttgttttgtatttatttcgtTGTACAATTTACCAATGCATCTCTCAGCATGGTTTGGGTAATACTTGAATGGACTGAGCTGCTGCCTTTCCTGTCAGCTAACTGTGTTACAAGATATTACAGGATGCATGACGTAGTCTGTGATCAGATAAGTACAGAGCTGGTGTAATACCACTCCTGTATAACTCATTTAGCAGGTACATAATCAATCTCAGACCCTCTCATCGACTTCACGACCTTTTTAAACAGTAGCCAAAGTCAGGTTCTCTTAAAAATAGTTATGCTGAATTTCAGCTTTTGGCTTTCCACTGCTAGCATTAACAACGTACAGCAAGATTGAACACGGATACGTTCTCTTGAAAGTGCATGACATCTCATAACGGAAGTGCATGATGTAGAAGGCTAAGGATGGATAACCTAAAGTAGTCCTCCCTCACTTGGCATGTGATTTGTCCTGTTTAAACCAAGGTTACTGGCAATTATCTTAATGACAGTTGCTCAGCTGTTGCAGAAAGTATGCAATTTCCTGACCCACTGGTTTAAGCAAAGTACCTCCTCgtgtattacattataaaagGCCTTTGACTCACCAAATGacatttactcactttcataCTTGGATTTATCTTAAAAGGTCCGACTAGCGCACAAACCCAATGTCTTTTAAGCAGGATCAATCGATTGAAACCGGCTCGCAGTGCAAACTGCAGCATTGTGTTGGAGAGTTTGCTCTTCGTGGTCATGTCCTTTGGATTGAGGGACTTAAAATGGATGAAATAAATGGATTTTAGTGTTTACTGCTTTCAAAGACTGAAGCGAGGTTGAGTCTGTGAGTGATATTGATCTGATTGCTCTAAAGTGTCTGCTTGAGCGGCATTTATGAGGACAGATGCTCTGCTCTTTGCTCAGAGTTTGCTGATGTGAGATTTCACTTACTATGAATTATTGACGTGACATTGAAGCATCTGCCACAACGCTACATactcaatttttttaatatttttgtgaaaaatttgATTTGTGTAATTTATGTTTGCAAGCACCTGATGTAAAGTACTGCCTGTTCTgaaagtgtacattttattttgttacaattACGCCTTTAATAAAATGCCTTTGCACAAA
>XM_043251391.1
agagaagcGATGAGGTAACGGATGCTGACGGAGAACAGAGAGCCCTGCGCTTCAGACCAGAGGACCAGTGTAACGTTAGCACCATGAACTGTGAAATTGATGGAGATATGGAGAATCAAGTTGAGCAAGAGGAGAAGACGAGACTCATAAACCAAGTGTTGGAGCTTCAGCACACACTTGAAGATCTCTCTGCGCGTGTGGACGCGGTGAAAGAGGAGAACCTTAAGCTTAAATCGGAGAACCAGGTTCTCGGTCAGTACATCGAGAACCTCATGTCTGCGTCCAGCGTGTTTCAGACCACCGACACCAAAAGCAAACGGAAATAACATGTGGATCACTTCTACTTCATCTATCGTCTACTCTTTCCGGCATTCAAGCTCATACATATAAGCcgctgtttgttttgtatttatttcgtTGTACAATTTACCAATGCATCTCTCAGCATGGTTTGGGTAATACTTGAATGGACTGAGCTGCTGCCTTTCCTGTCAGCTAACTGTGTTACAAGATATTACAGGATGCATGACGTAGTCTGTGATCAGATAAGTACAGAGCTGGTGTAATACCACTCCTGTATAACTCATTTAGCAGGTACATAATCAATCTCAGACCCTCTCATCGACTTCACGACCTTTTTAAACAGTAGCCAAAGTCAGGTTCTCTTAAAAATAGTTATGCTGAATTTCAGCTTTTGGCTTTCCACTGCTAGCATTAACAACGTACAGCAAGATTGAACACGGATACGTTCTCTTGAAAGTGCATGACATCTCATAACGGAAGTGCATGATGTAGAAGGCTAAGGATGGATAACCTAAAGTAGTCCTCCCTCACTTGGCATGTGATTTGTCCTGTTTAAACCAAGGTTACTGGCAATTATCTTAATGACAGTTGCTCAGCTGTTGCAGAAAGTATGCAATTTCCTGACCCACTGGTTTAAGCAAAGTACCTCCTCgtgtattacattataaaagGCCTTTGACTCACCAAATGacatttactcactttcataCTTGGATTTATCTTAAAAGGTCCGACTAGCGCACAAACCCAATGTCTTTTAAGCAGGATCAATCGATTGAAACCGGCTCGCAGTGCAAACTGCAGCATTGTGTTGGAGAGTTTGCTCTTCGTGGTCATGTCCTTTGGATTGAGGGACTTAAAATGGATGAAATAAATGGATTTTAGTGTTTACTGCTTTCAAAGACTGAAGCGAGGTTGAGTCTGTGAGTGATATTGATCTGATTGCTCTAAAGTGTCTGCTTGAGCGGCATTTATGAGGACAGATGCTCTGCTCTTTGCTCAGAGTTTGCTGATGTGAGATTTCACTTACTATGAATTATTGACGTGACATTGAAGCATCTGCCACAACGCTACATactcaatttttttaatatttttgtgaaaaatttgATTTGTGTAATTTATGTTTGCAAGCACCTGATGTAAAGTACTGCCTGTTCTgaaagtgtacattttattttgttacaattACGCCTTTAATAAAATGCCTTTGCACAAA

Function

symbol description
scoca Predicted to be involved in positive regulation of macroautophagy and regulation of protein complex stability. Predicted to be located in Golgi membrane and cytosol. Predicted to colocalize with trans-Golgi network. Is expressed in neural keel and neural plate. Orthologous to human SCOC (short coiled-coil protein).
scoc Involved in positive regulation of macroautophagy and regulation of protein complex stability. Located in Golgi apparatus and nucleoplasm. Colocalizes with endosome and trans-Golgi network.

NR:

description
PREDICTED: short coiled-coil protein isoform X1

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6498 False 1630 lncRNA 0.34 4 19774561 19777043
TU6499 False 1533 lncRNA 0.31 4 19774561 19777043
TU6501 False 1553 lncRNA 0.54 5 19715553 19777043
TU6502 True 1811 lncRNA 0.35 3 19774561 19777043
XM_043251365.1 False 1720 mRNA 0.42 4 19772284 19777050
XM_043251373.1 False 1649 mRNA 0.41 4 19774549 19777050
XM_043251382.1 False 1566 mRNA 0.41 4 19774535 19777050
XM_043251391.1 False 1522 mRNA 0.41 4 19774589 19777050

Neighbor

gene id symbol gene type direction distance location
LOC122353421 LOC107712008,LOC107671479,LOC107552100,LOC107737086,LOC107556535,LOC107674229 coding upstream 51857 19653271 ~ 19663696 (+)
zgc:56493 zgc:56493,LOC107674259,LOC107737089,LOC107559635,LOC107671288,LOC107551115,LOC103040975,LOC108444223 coding upstream 75037 19637305 ~ 19640516 (+)
faah2a faah2a,LOC107551107,LOC107712025,LOC107737091,LOC107559634,LOC107674256,LOC108263609,LOC108434801 coding upstream 80148 19629756 ~ 19635405 (+)
LOC122353518 NA coding upstream 102482 19606622 ~ 19613071 (+)
LOC122348841 LOC107559639,LOC107551053,LOC107552058 coding upstream 112352 19598115 ~ 19603201 (+)
naa15b naa15b,LOC107712022,LOC107737080,LOC107674234,LOC107671368,LOC108434806,LOC108263533 coding downstream 9660 19786710 ~ 19800145 (+)
LOC122353562 LOC107671374,LOC107712028,LOC107556515,LOC107674199,LOC797949,LOC107752905 coding downstream 23104 19800154 ~ 19803853 (+)
LOC122353552 zgc:194443,LOC107552058,LOC107551053 coding downstream 28843 19805893 ~ 19809040 (+)
htra3a htra3,htra3a,LOC107671567,LOC107674193,LOC107752916,LOC107712020 coding downstream 33067 19810117 ~ 19817661 (+)
gpr78a LOC107712019,LOC107552545,LOC107671586,LOC107556530,LOC107674203,LOC107752934 coding downstream 54935 19831985 ~ 19834951 (+)
G4553 NA non-coding upstream 140793 19574411 ~ 19574760 (+)
G4531 NA non-coding upstream 190773 19524546 ~ 19524780 (+)
LOC122333031 NA non-coding upstream 538726 18993761 ~ 19176827 (+)
G4361 NA non-coding upstream 967800 18747234 ~ 18747753 (+)
G4360 glra3,LOC102780741,LOC101174559,LOC102299625 non-coding upstream 992258 18723075 ~ 18723295 (+)
G4677 dok7,LOC107749932,LOC107674231,LOC107552150,LOC107714234,LOC107679881 non-coding downstream 193726 19970776 ~ 19972265 (+)
G4678 dok7,LOC107714234,LOC107674231,LOC107679881,LOC107749932 non-coding downstream 201919 19978969 ~ 19980622 (+)
G4679 dok7,LOC107552150,LOC107749932,LOC107679881,LOC107674231 non-coding downstream 205754 19982804 ~ 19983127 (+)
G4680 NA non-coding downstream 207675 19984725 ~ 19984981 (+)
G4686 rgs12b,LOC107749922,LOC107679871,LOC107551217 non-coding downstream 222291 19999341 ~ 20000548 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 193154 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 1430909 18247250 ~ 18284644 (+)
lsm6 lsm6 other upstream 1817007 17896535 ~ 17898546 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other upstream 2104808 17551473 ~ 17610745 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other upstream 3645638 16064271 ~ 16069915 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other downstream 365411 20142461 ~ 20145856 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other downstream 464768 20241818 ~ 20243349 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 1544412 21321462 ~ 21361440 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 1813827 21590877 ~ 21620592 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other downstream 1855165 21632215 ~ 21635052 (+)

Expression


Co-expression Network