pcid2 (pcid2)


Basic Information

Item Value
gene id pcid2
gene name pcid2
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2511572 ~ 2518385 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU706
TGGTGGTTCAATATCCTTTGTGTGTTCTTGTTGTGTGTTCttgttgtgtgtctgtgtgtcggATGAGCGGCCGCTCGGTGTTTGTTCTTAACGCAGCTCAACATCGTTCCTGAAGGCGTTCCAGGCTCATAAAGAGGAGAACTGGGCACTTCCCATCATGTTCGCTGTGACCCTTGACCTCAGGATATTCGCCAATAATGCGGAGCAGCAGCTGCAGTCGAAAGGCAAGGGGAAGATTGGAGACATGCTGGAGAAAGCAGCGGAGCAACTCATGAGCTGCTTTAGAGTGTGTGCCAGTGACAAGTGagtgacacagacacacacacacacacacacacacacagacacacacacac
>TU718
TAACATCAGTGTTATAAACCTGTTACAAACCTCCATTTAATGTGCCATTTACCGAGACTCTTAAGTGACACACATGTTTATGCAAAGGCTCGTGTTGCTGCACTGGggtatttattagtatttacatttatggaaAGTGCATATCGGAATCCACAGCTGCGTGTTCACGGATGTAAACAGGAAGCGCTGCTGTGACGTCAACCGCTCTGCAGCGAAGTGCACGCGCGAAGGGATGCGCATTTTATCTGGGCAGCACCCTTAATAGACAGCTGTGTGTTTGAGGAGCTCAGGATGGCTCACATCACCCTGAATCAGTACCTGCagcagGTTCTGGAGGCCATCGAGAGCAGAGACGGCTCTTTCTGTTCAGAGATGCTGTCGTTCAAACACCCTCACGTGGCTAATCCTCGTCTCCAGcTCTCCAGCCCGGAGGAGAAGTGTCAGCAGCTGCTGGAGCCTCCGTATGATGAGATGGTAGCAGCTCACCTCAGGTGAGGGTTGTTTCTCTtcagtgaagctgctctctctctctctctatctctctctctgtctctctctctctctctctctgtctctctctct
>XM_043236065.1
TCGTTGCTTTGAGACTGAGAAAAATTACCATTATTATAAGTCAGTGTGACTATGTCATTACTTTGCATTTAGAATAAAGTGCATTTTCCAGTGAATGTAAAATCAATGTAAATGGCAACTTaaattgcattgtttaatacTGATAACGTTAACATCAGTGTTATAAACCTGTTACAAACCTCCATTTAATGTGCCATTTACCGAGACTCTTAAGTGACACACATGTTTATGCAAAGGCTCGTGTTGCTGCACTGGggtatttattagtatttacatttatggaaAGTGCATATCGGAATCCACAGCTGCGTGTTCACGGATGTAAACAGGAAGCGCTGCTGTGACGTCAACCGCTCTGCAGCGAAGTGCACGCGCGAAGGGATGCGCATTTTATCTGGTAGGCAGCACCCTTAATAGACAGCTGTGTGTTTGAGGAGCTCAGGATGGCTCACATCACCCTGAATCAGTACCTGCagcagGTTCTGGAGGCCATCGAGAGCAGAGACGGCTCTTTCTGTTCAGAGATGCTGTCGTTCAAACACCCTCACGTGGCTAATCCTCGTCTCCAGcTCTCCAGCCCGGAGGAGAAGTGTCAGCAGCTGCTGGAGCCTCCGTATGATGAGATGGTAGCAGCTCACCTCAGGTGCTCAACATCGTTCCTGAAGGCGTTCCAGGCTCATAAAGAGGAGAACTGGGCACTTCCCATCATGTTCGCTGTGACCCTTGACCTCAGGATATTCGCCAATAATGCGGAGCAGCAGCTGCAGTCGAAAGGCAAGGGGAAGATTGGAGACATGCTGGAGAAAGCAGCGGAGCAACTCATGAGCTGCTTTAGAGTGTGTGCCAGTGACAAtcgTGCTATGATTCAAAGTAAATGGGGAATGTTGTTCCTGATCAATCAGCTCTTCAAGATCTATTTCAAAatcaATAAGCTGCACCTGTGTAAGCCGCTGATCCGAGCGATCGACAGCTCTAACCTGAAGGACGAGTACAGCACGGCTCAGCGCGTCACCTACAAGTACTACGTGGGCAGGAAGGCCATGTTCGACAGCGACTTCAAACAAGCTGAGGAGTATCTGTCCTTCTCCTTCACTCACTGTCATCGCTCCAGTCAGAGGAACAAGCGTCTGATCCTCATCTACCTGCTGCCTGTGAAGATGCTGCTGGGTCACATGCCCACACACCAGCTGCTGAAGAAGTACGACCTCATGCAGTTCACAGACGTCACCAAAGCTGtgagcgagGGGAACCTCCTGCTGCTGAACGAAGCTCTGGTCAAACACGAGACGTTCTTCATCCGCTGCGGTATCTTCCTCATCCTGGAGAAGCTGAAGATCATCACCTACAGGAACCTCTTCAAGAAAGTCTATCATCTGCTGAAGACCCATCAACTTCCTCTGGACGCCTTCCTCGTGGCTCTGAGGATGATGAAGGTGGAGGACGTGGACATCGACGAGGTTCAGTGCATCCTGGCCAACCTCATCTTCATGGGTCACATCAAGGGTTATATTTCCCATCAGCACCAGAAGCTGGTGGTCAGCAAGCAGAACCCGTTTCCTCCGCTGTCCAGCGTGTCCTAACCTCAGCTCCCAGAATGCACCTGTTTCTCCACGATCCCATCAGTCTAGCCGGTCCTCAGCAGTTCATCCTCATTTCAtgttcaacctttttttttattgatttttcaaataaacttcacagtgttttta

Function

symbol description
pcid2 Predicted to enable RNA binding activity and double-stranded DNA binding activity. Predicted to be involved in RNA metabolic process; poly(A)+ mRNA export from nucleus; and posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to be part of transcription export complex 2. Orthologous to human PCID2 (PCI domain containing 2).

NR:

description
PREDICTED: PCI domain-containing protein 2

GO: NA

KEGG:

id description
K23801 PCID2, THP1; nuclear mRNA export protein PCID2/THP1

RNA

RNA id representative length rna type GC content exon number start site end site
TU706 False 356 lncRNA 0.42 3 2514988 2515506
TU718 False 582 TUCP 0.39 4 2511721 2513859
XM_043236065.1 True 1709 mRNA 0.48 15 2511572 2518385

Neighbor

gene id symbol gene type direction distance location
adprhl1 adprhl1,LOC107694472 coding upstream 30013 2469473 ~ 2481559 (+)
gas6 gas6,LOC107694478,LOC107573434,LOC107751089 coding upstream 105285 2390877 ~ 2406287 (+)
pros1 pros1 coding upstream 123923 2371927 ~ 2387649 (+)
rasa3 rasa3 coding upstream 140437 2334161 ~ 2371135 (+)
LOC122345332 LOC107698899,LOC107751092,LOC107593812,LOC107580773 coding upstream 201184 2301741 ~ 2310388 (+)
creg1 creg1,LOC107751059,LOC107694464,LOC107551109,LOC107739160,LOC107654633 coding downstream 42972 2561357 ~ 2564419 (+)
cd247 cd247 coding downstream 46161 2564546 ~ 2573977 (+)
gpa33a NA coding downstream 129042 2647427 ~ 2654848 (+)
LOC122351317 ildr2,LOC107662109,LOC107751053 coding downstream 137748 2656133 ~ 2676029 (+)
ildr1a LOC107751054,LOC107570078 coding downstream 159913 2678298 ~ 2690765 (+)
G485 NA non-coding upstream 19695 2489483 ~ 2491877 (+)
G463 NA non-coding upstream 89925 2420476 ~ 2421647 (+)
G440 NA non-coding upstream 138416 2372715 ~ 2373156 (+)
G457 NA non-coding upstream 184242 2323285 ~ 2327330 (+)
G439 NA non-coding upstream 235301 2275992 ~ 2276271 (+)
G504 NA non-coding downstream 20848 2539233 ~ 2540401 (+)
G505 LOC107751062,LOC107570084,LOC107694469,LOC107551096,LOC107747071 non-coding downstream 22102 2540487 ~ 2542309 (+)
G512 NA non-coding downstream 60931 2579316 ~ 2583647 (+)
G517 NA non-coding downstream 70060 2588445 ~ 2588673 (+)
G518 NA non-coding downstream 70302 2588687 ~ 2589008 (+)
grtp1a grtp1,grtp1a,LOC107571994 other upstream 22469 2483640 ~ 2489103 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other upstream 319108 2185821 ~ 2192464 (+)
LOC122327253 NA other upstream 1069906 1439040 ~ 1441666 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other upstream 1390851 1119719 ~ 1120721 (+)
LOC122341994 NA other upstream 2061932 445940 ~ 449640 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other downstream 6140 2524525 ~ 2527244 (+)
G482 dusp27 other downstream 76546 2594931 ~ 2596302 (+)
G727 NA other downstream 816273 3334658 ~ 3340876 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other downstream 1118322 3636707 ~ 3699093 (+)
G824 NA other downstream 1838313 4356698 ~ 4357260 (+)

Expression


Co-expression Network