LOC122348864 (ctnna2,LOC107706127)


Basic Information

Item Value
gene id LOC122348864
gene name ctnna2,LOC107706127
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 21321462 ~ 21361440 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7127
GACGAGCGCTACGTCCCCAATCCTGCTAAAATGGGACCCCAAGAGTCTTGAGATTCGCACGTTGACTGTGGAGAGGCTGCTGGAGCCATTGGTTACACAGGTGACCACTCTGGTCAACACCAGTAACAAAGGTCCATCCAGTAAGAAAAAGGGACGCTCCAAGAAAGCTCACGTGCTGGCTGTGTCCGTGGAGCAGGCGACGCAGAACTTCCTAGAAAAGGGCGAGCAGATTGCTAAGGACAGCCAGGACCTGAAGGAGGAGCTTATCGCAGCTGTAGAGGACGTTCGCAAACAAGGTGAGACGATGCGCGTGGCCTCCTCAGAGTTTGCAGATGACCCCTGCTCCTCTGTGAAACGTGGCACCATGGTCCGAGCCGCCCGTGCCCTCCTCTCTGCCGTCACTCGCCTCCTCATCCTGGCTGACATGGCCGATGTCATGAGGCTCCTGGCTCACCTCAAGATCGTGGAAGAAGCTCTAGAAGCTGTGAAGAATGCCACCAATGAGCAGGACTTGGCCAATCGCTTCAAGGAGTTCGGGAAAGAGATGGTCAAACTCAACTATGTTGCTGCTCGCAGACAGCAGGAGCTGAAGGACCCTCAGTGCAGGGACGAGATGGCGGCGGCTCGAGGGGCTCTTAAGAAGAACGCCACTATGCTCTATACTGCCTCCCAGGCCTTCCTGCGCCACCCCGATGTGGCTGCTACACGTGCCAACCGCGACTATGTCTTCAAACAGGTCCAAGAAGCCATCGGGGGCATCTCCAGCTCTGCCCAGGCCACTTCACCCACCGATGAGAAGCACGGGCACGCCGGCATTGGCGAGCTAGCCGCCGCTCTCAACGAGTTTGATaataAGATCATTCTGGACCCGCTAACATTCAGTGAGGCTCGCTTCAGGCCATCACTCGAGGAACGTCTGGAGAGCATCATCAGTGGTGCCGCCCTCATGGCCGACTCCTCCTGCACACGCGACGACCGCCGTGAACGCATCGTAGCCGAGTGCAACGCCGTGCGCCAGGCCCTACAAGACCTGCTGAGCGAGTACATGAACAATAccggaagaaaagaaaaaggagacCCCCTGAATTCAGCTATCGACAAGATGACCAAAAAGACCCGTGATCTACGCAGACAG
>XM_043244757.1
CATGACGAGCGCTACGTCCCCAATCCTGCTAAAATGGGACCCCAAGAGTCTTGAGATTCGCACGTTGACTGTGGAGAGGCTGCTGGAGCCATTGGTTACACAGGTGACCACTCTGGTCAACACCAGTAACAAAGGTCCATCCAGTAAGAAAAAGGGACGCTCCAAGAAAGCTCACGTGCTGGCTGTGTCCGTGGAGCAGGCGACGCAGAACTTCCTAGAAAAGGGCGAGCAGATTGCTAAGGACAGCCAGGACCTGAAGGAGGAGCTTATCGCAGCTGTAGAGGACGTTCGCAAACAAGGTGAGACGATGCGCGTGGCCTCCTCAGAGTTTGCAGATGACCCCTGCTCCTCTGTGAAACGTGGCACCATGGTCCGAGCCGCCCGTGCCCTCCTCTCTGCCGTCACTCGCCTCCTCATCCTGGCTGACATGGCCGATGTCATGAGGCTCCTGGCTCACCTCAAGATCGTGGAAGAAGCTCTAGAAGCTGTGAAGAATGCCACCAATGAGCAGGACTTGGCCAATCGCTTCAAGGAGTTCGGGAAAGAGATGGTCAAACTCAACTATGTTGCTGCTCGCAGACAGCAGGAGCTGAAGGACCCTCAGTGCAGGGACGAGATGGCGGCGGCTCGAGGGGCTCTTAAGAAGAACGCCACTATGCTCTATACTGCCTCCCAGGCCTTCCTGCGCCACCCCGATGTGGCTGCTACACGTGCCAACCGCGACTATGTCTTCAAACAGGTCCAAGAAGCCATCGGGGGCATCTCCAGCTCTGCCCAGGCCACTTCACCCACCGATGAGAAGCACGGGCACGCCGGCATTGGCGAGCTAGCCGCCGCTCTCAACGAGTTTGATaataAGATCATTCTGGACCCGCTAACATTCAGTGAGGCTCGCTTCAGGCCATCACTCGAGGAACGTCTGGAGAGCATCATCAGTGGTGCCGCCCTCATGGCCGACTCCTCCTGCACACGCGACGACCGCCGTGAACGCATCGTAGCCGAGTGCAACGCCGTGCGCCAGGCCCTACAAGACCTGCTGAGCGAGTACATGAACAATAccggaagaaaagaaaaaggagacCCCCTGAATTCAGCTATCGACAAGATGACCAAAAAGACCCGTGATCTACGCAGACAGAACACAAAAGGCAAATATAGGATGAGAGGATGGTGA

Function

symbol description
ctnna2 Predicted to enable several functions, including actin filament binding activity; beta-catenin binding activity; and cadherin binding activity. Predicted to be involved in several processes, including brain morphogenesis; neuron projection morphogenesis; and regulation of synapse structural plasticity. Predicted to act upstream of or within actin filament organization; cell differentiation; and epithelial cell-cell adhesion. Predicted to be located in adherens junction; axon; and cytoplasm. Is expressed in female organism. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Orthologous to human CTNNA2 (catenin alpha 2).

NR:

description
PREDICTED: catenin alpha-2-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7127 False 1135 TUCP 0.52 7 21321465 21361275
XM_043244757.1 True 1174 mRNA 0.56 8 21321462 21361440

Neighbor

gene id symbol gene type direction distance location
lrrtm1 LOC107706126,LOC107551676,LOC107711523,LOC107689474,LOC107558618,LOC107692175 coding upstream 284134 21032623 ~ 21037328 (+)
suclg1 suclg1,LOC107674246,LOC107730526,LOC107664570 coding upstream 610144 20696533 ~ 20711318 (+)
si:dkey-162b23.4 si:dkey-162b23.4,LOC107664549,LOC107746792,LOC107674263 coding upstream 629167 20683776 ~ 20692295 (+)
bdh2 bdh2,LOC107746975,LOC107674194 coding upstream 637997 20677706 ~ 20683465 (+)
tacr3a tacr3,tacr3a,LOC107746781,LOC107556806,LOC107674253,LOC107552719,LOC108411976 coding upstream 659283 20630957 ~ 20662179 (+)
LOC122349977 ctnna2 coding downstream 26443 21387883 ~ 21410495 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521,LOC107692201,LOC107567044,LOC107552750 coding downstream 166823 21528263 ~ 21536977 (+)
LOC122341576 LOC107747335 coding downstream 335081 21696521 ~ 21707510 (+)
trnak-uuu NA coding downstream 522996 21884436 ~ 21884508 (+)
dnaja1 dnaja1,LOC107746728,LOC107603013,LOC107676129,LOC107720316,LOC107551804,LOC108431796,LOC108260608,LOC106591825 coding downstream 523326 21884766 ~ 21890170 (+)
G4996 NA non-coding upstream 243566 21077039 ~ 21077896 (+)
G4991 NA non-coding upstream 300736 21017220 ~ 21020726 (+)
G4984 ctnna2 non-coding upstream 390820 20928297 ~ 20930642 (+)
G4976 NA non-coding upstream 600426 20720279 ~ 20721036 (+)
G4853 NA non-coding upstream 860894 20460337 ~ 20460568 (+)
G5028 smox,LOC107719767,LOC107689473,LOC107551688,LOC107692173,LOC107551695,LOC107567053 non-coding downstream 206662 21568102 ~ 21571149 (+)
G5078 LOC107719778,LOC107689468,LOC107567043,LOC107692165 non-coding downstream 346414 21707854 ~ 21709359 (+)
G5098 NA non-coding downstream 382425 21743865 ~ 21744213 (+)
G5118 dtx4,LOC107746726,LOC107676128,LOC107692161,LOC107603012 non-coding downstream 508460 21869900 ~ 21871709 (+)
G5111 rps6,LOC107603014,LOC107551827,LOC107676127,LOC107720314 non-coding downstream 537610 21899050 ~ 21905109 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 1078113 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 1175606 20142461 ~ 20145856 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other upstream 1544412 19715553 ~ 19777050 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 1799063 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 3036818 18247250 ~ 18284644 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 229437 21590877 ~ 21620592 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other downstream 270775 21632215 ~ 21635052 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 1479248 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 2181624 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 2922042 24283482 ~ 24293329 (+)

Expression


Co-expression Network